Literature DB >> 17250997

Comparing two approaches for aligning representations of anatomy.

Songmao Zhang1, Peter Mork, Olivier Bodenreider, Philip A Bernstein.   

Abstract

OBJECTIVE: To analyze the comparison, through their results, of two distinct approaches applied to aligning two representations of anatomy. MATERIALS: Both approaches use a combination of lexical and structural techniques. In addition, the first approach takes advantage of domain knowledge, while the second approach treats alignment as a special case of schema matching. The same versions of FMA and GALEN were aligned by each approach. Two thousand one hundred and ninety-nine concept matches were obtained by both approaches. METHODS AND
RESULTS: For matches identified by one approach only (337 and 336, respectively), we analyzed the reasons that caused the other approach to fail.
CONCLUSIONS: The first approach could be improved by addressing partial lexical matches and identifying matches based solely on structural similarity. The second approach may be improved by taking into account synonyms in FMA and identifying semantic mismatches. However, only 33% of the possible one-to-one matches among anatomical concepts were identified by the two approaches together. New directions need to be explored in order to handle more complex matches.

Entities:  

Mesh:

Year:  2007        PMID: 17250997      PMCID: PMC1973160          DOI: 10.1016/j.artmed.2006.12.002

Source DB:  PubMed          Journal:  Artif Intell Med        ISSN: 0933-3657            Impact factor:   5.326


  7 in total

1.  GALEN's model of parts and wholes: experience and comparisons.

Authors:  J Rogers; A Rector
Journal:  Proc AMIA Symp       Date:  2000

2.  Using the GRAIL language for classification management.

Authors:  P E Zanstra; E J van der Haring; F Flier; J E Rogers; W D Solomon
Journal:  Stud Health Technol Inform       Date:  1997

3.  A reference ontology for biomedical informatics: the Foundational Model of Anatomy.

Authors:  Cornelius Rosse; José L V Mejino
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

4.  Aligning representations of anatomy using lexical and structural methods.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2003

5.  Comparing associative relationships among equivalent concepts across ontologies.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  Stud Health Technol Inform       Date:  2004

6.  Challenges in precisely aligning models of human anatomy using generic schema matching.

Authors:  Peter Mork; Rachel Pottinger; Philip A Bernstein
Journal:  Stud Health Technol Inform       Date:  2004

7.  The GRAIL concept modelling language for medical terminology.

Authors:  A L Rector; S Bechhofer; C A Goble; I Horrocks; W A Nowlan; W D Solomon
Journal:  Artif Intell Med       Date:  1997-02       Impact factor: 5.326

  7 in total
  4 in total

1.  Translating the Foundational Model of Anatomy into French using knowledge-based and lexical methods.

Authors:  Tayeb Merabti; Lina F Soualmia; Julien Grosjean; Olivier Palombi; Jean-Michel Müller; Stéfan J Darmoni
Journal:  BMC Med Inform Decis Mak       Date:  2011-10-26       Impact factor: 2.796

2.  An effective method of large scale ontology matching.

Authors:  Gayo Diallo
Journal:  J Biomed Semantics       Date:  2014-10-28

3.  Mapping proteins to disease terminologies: from UniProt to MeSH.

Authors:  Anaïs Mottaz; Yum L Yip; Patrick Ruch; Anne-Lise Veuthey
Journal:  BMC Bioinformatics       Date:  2008-04-29       Impact factor: 3.169

Review 4.  A review of auditing techniques for the Unified Medical Language System.

Authors:  Ling Zheng; Zhe He; Duo Wei; Vipina Keloth; Jung-Wei Fan; Luke Lindemann; Xinxin Zhu; James J Cimino; Yehoshua Perl
Journal:  J Am Med Inform Assoc       Date:  2020-10-01       Impact factor: 4.497

  4 in total

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