Literature DB >> 14726954

Sin mutations alter inherent nucleosome mobility.

Andrew Flaus1, Chantal Rencurel, Helder Ferreira, Nicola Wiechens, Tom Owen-Hughes.   

Abstract

Previous studies have identified sin mutations that alleviate the requirement for the yeast SWI/SNF chromatin remodelling complex, which include point changes in the yeast genes encoding core histones. Here we characterise the biochemical properties of nucleosomes bearing these mutations. We find that sin mutant nucleosomes have a high inherent thermal mobility. As the SWI/SNF complex can alter nucleosome positioning, the higher mobility of sin mutant nucleosomes provides a means by which sin mutations may substitute for SWI/SNF function. The location of sin mutations also provides a new opportunity for insights into the mechanism for nucleosome mobilisation. We find that both mutations altering histone DNA contacts at the nucleosome dyad and mutations in the dimer-tetramer interface influence nucleosome mobility. Furthermore, incorporation of H2A.Z into nucleosomes, which also alters dimer-tetramer interactions, affects nucleosome mobility. Thus, variation of histone sequence or subtype provides a means by which eukaryotes may regulate access to chromatin through alterations to nucleosome mobility.

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Year:  2004        PMID: 14726954      PMCID: PMC1271755          DOI: 10.1038/sj.emboj.7600047

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  54 in total

1.  SWI-SNF-mediated nucleosome remodeling: role of histone octamer mobility in the persistence of the remodeled state.

Authors:  M Jaskelioff; I M Gavin; C L Peterson; C Logie
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

2.  Characterization of the stability and folding of H2A.Z chromatin particles: implications for transcriptional activation.

Authors:  D W Abbott; V S Ivanova; X Wang; W M Bonner; J Ausió
Journal:  J Biol Chem       Date:  2001-09-10       Impact factor: 5.157

3.  The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states.

Authors:  Jun Y Fan; Faye Gordon; Karolin Luger; Jeffrey C Hansen; David John Tremethick
Journal:  Nat Struct Biol       Date:  2002-03

4.  The SIN domain of the histone octamer is essential for intramolecular folding of nucleosomal arrays.

Authors:  Peter J Horn; Kimberly A Crowley; Lenny M Carruthers; Jeffrey C Hansen; Craig L Peterson
Journal:  Nat Struct Biol       Date:  2002-03

5.  Antagonistic remodelling by Swi-Snf and Tup1-Ssn6 of an extensive chromatin region forms the background for FLO1 gene regulation.

Authors:  A B Fleming; S Pennings
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

Review 6.  ATP-dependent nucleosome remodeling.

Authors:  Peter B Becker; Wolfram Hörz
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

7.  Modifying gene expression programs by altering core promoter chromatin architecture.

Authors:  Stavros Lomvardas; Dimitris Thanos
Journal:  Cell       Date:  2002-07-26       Impact factor: 41.582

8.  Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions.

Authors:  C L White; R K Suto; K Luger
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

9.  Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes.

Authors:  M S Santisteban; T Kalashnikova; M M Smith
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

10.  Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae.

Authors:  P Sudarsanam; V R Iyer; P O Brown; F Winston
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

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  50 in total

Review 1.  Dynamic nucleosomes.

Authors:  Karolin Luger
Journal:  Chromosome Res       Date:  2006       Impact factor: 5.239

2.  A gene-specific requirement for FACT during transcription is related to the chromatin organization of the transcribed region.

Authors:  Silvia Jimeno-González; Fernando Gómez-Herreros; Paula M Alepuz; Sebastián Chávez
Journal:  Mol Cell Biol       Date:  2006-09-25       Impact factor: 4.272

3.  The LRS and SIN domains: two structurally equivalent but functionally distinct nucleosomal surfaces required for transcriptional silencing.

Authors:  Christopher J Fry; Anne Norris; Michael Cosgrove; Jef D Boeke; Craig L Peterson
Journal:  Mol Cell Biol       Date:  2006-10-02       Impact factor: 4.272

4.  Histone tails and the H3 alphaN helix regulate nucleosome mobility and stability.

Authors:  Helder Ferreira; Joanna Somers; Ryan Webster; Andrew Flaus; Tom Owen-Hughes
Journal:  Mol Cell Biol       Date:  2007-03-26       Impact factor: 4.272

5.  Protein-protein Förster resonance energy transfer analysis of nucleosome core particles containing H2A and H2A.Z.

Authors:  Duane A Hoch; Jessica J Stratton; Lisa M Gloss
Journal:  J Mol Biol       Date:  2007-06-02       Impact factor: 5.469

Review 6.  In vivo veritas: using yeast to probe the biological functions of G-quadruplexes.

Authors:  Jay E Johnson; Jasmine S Smith; Marina L Kozak; F Brad Johnson
Journal:  Biochimie       Date:  2008-02-21       Impact factor: 4.079

Review 7.  Mechanisms for ATP-dependent chromatin remodelling: the means to the end.

Authors:  Andrew Flaus; Tom Owen-Hughes
Journal:  FEBS J       Date:  2011-09-08       Impact factor: 5.542

8.  Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding.

Authors:  Mridula Manohar; Alex M Mooney; Justin A North; Robin J Nakkula; Jonathan W Picking; Annick Edon; Richard Fishel; Michael G Poirier; Jennifer J Ottesen
Journal:  J Biol Chem       Date:  2009-06-11       Impact factor: 5.157

9.  Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy.

Authors:  Sarah J Hainer; Joseph A Martens
Journal:  Mol Cell Biol       Date:  2011-07-05       Impact factor: 4.272

10.  Human SWI/SNF drives sequence-directed repositioning of nucleosomes on C-myc promoter DNA minicircles.

Authors:  Hillel I Sims; Jacqueline M Lane; Natalia P Ulyanova; Gavin R Schnitzler
Journal:  Biochemistry       Date:  2007-09-18       Impact factor: 3.162

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