Literature DB >> 18331848

In vivo veritas: using yeast to probe the biological functions of G-quadruplexes.

Jay E Johnson1, Jasmine S Smith, Marina L Kozak, F Brad Johnson.   

Abstract

Certain guanine-rich sequences are capable of forming higher order structures known as G-quadruplexes. Moreover, particular genomic regions in a number of highly divergent organisms are enriched for such sequences, raising the possibility that G-quadruplexes form in vivo and affect cellular processes. While G-quadruplexes have been rigorously studied in vitro, whether these structures actually form in vivo and what their roles might be in the context of the cell have remained largely unanswered questions. Recent studies suggest that G-quadruplexes participate in the regulation of such varied processes as telomere maintenance, transcriptional regulation and ribosome biogenesis. Here we review studies aimed at elucidating the in vivo functions of quadruplex structures, with a particular focus on findings in yeast. In addition, we discuss the utility of yeast model systems in the study of the cellular roles of G-quadruplexes.

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Year:  2008        PMID: 18331848      PMCID: PMC2585026          DOI: 10.1016/j.biochi.2008.02.013

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  121 in total

Review 1.  G-quadruplexes as targets for drug design.

Authors:  L H Hurley; R T Wheelhouse; D Sun; S M Kerwin; M Salazar; O Y Fedoroff; F X Han; H Han; E Izbicka; D D Von Hoff
Journal:  Pharmacol Ther       Date:  2000-03       Impact factor: 12.310

2.  Nbs1 potentiates ATP-driven DNA unwinding and endonuclease cleavage by the Mre11/Rad50 complex.

Authors:  T T Paull; M Gellert
Journal:  Genes Dev       Date:  1999-05-15       Impact factor: 11.361

3.  The Bloom's syndrome helicase unwinds G4 DNA.

Authors:  H Sun; J K Karow; I D Hickson; N Maizels
Journal:  J Biol Chem       Date:  1998-10-16       Impact factor: 5.157

4.  Yeast meiosis-specific protein Hop1 binds to G4 DNA and promotes its formation.

Authors:  K Muniyappa; S Anuradha; B Byers
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

5.  The yeast STM1 gene encodes a purine motif triple helical DNA-binding protein.

Authors:  L D Nelson; M Musso; M W Van Dyke
Journal:  J Biol Chem       Date:  2000-02-25       Impact factor: 5.157

6.  Human werner syndrome DNA helicase unwinds tetrahelical structures of the fragile X syndrome repeat sequence d(CGG)n.

Authors:  M Fry; L A Loeb
Journal:  J Biol Chem       Date:  1999-04-30       Impact factor: 5.157

7.  Sequence and structural selectivity of nucleic acid binding ligands.

Authors:  J Ren; J B Chaires
Journal:  Biochemistry       Date:  1999-12-07       Impact factor: 3.162

8.  High affinity interactions of nucleolin with G-G-paired rDNA.

Authors:  L A Hanakahi; H Sun; N Maizels
Journal:  J Biol Chem       Date:  1999-05-28       Impact factor: 5.157

9.  The Saccharomyces cerevisiae Sgs1 helicase efficiently unwinds G-G paired DNAs.

Authors:  H Sun; R J Bennett; N Maizels
Journal:  Nucleic Acids Res       Date:  1999-05-01       Impact factor: 16.971

10.  Complex formation and functional versatility of Mre11 of budding yeast in recombination.

Authors:  T Usui; T Ohta; H Oshiumi; J Tomizawa; H Ogawa; T Ogawa
Journal:  Cell       Date:  1998-11-25       Impact factor: 41.582

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  30 in total

Review 1.  Application of metal coordination chemistry to explore and manipulate cell biology.

Authors:  Kathryn L Haas; Katherine J Franz
Journal:  Chem Rev       Date:  2009-10       Impact factor: 60.622

Review 2.  Potential in vivo roles of nucleic acid triple-helices.

Authors:  Fabian A Buske; John S Mattick; Timothy L Bailey
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

3.  Computational approaches to the detection and analysis of sequences with intramolecular G-quadruplex forming potential.

Authors:  Paul Ryvkin; Steve G Hershman; Li-San Wang; F Brad Johnson
Journal:  Methods Mol Biol       Date:  2010

4.  "One ring to bind them all"-part I: the efficiency of the macrocyclic scaffold for g-quadruplex DNA recognition.

Authors:  David Monchaud; Anton Granzhan; Nicolas Saettel; Aurore Guédin; Jean-Louis Mergny; Marie-Paule Teulade-Fichou
Journal:  J Nucleic Acids       Date:  2010-05-24

5.  A G-quadruplex structure within the 5'-UTR of TRF2 mRNA represses translation in human cells.

Authors:  Dennis Gomez; Aurore Guédin; Jean-Louis Mergny; Bernard Salles; Jean-François Riou; Marie-Paule Teulade-Fichou; Patrick Calsou
Journal:  Nucleic Acids Res       Date:  2010-06-22       Impact factor: 16.971

6.  Selective Binding of Distamycin A Derivative to G-Quadruplex Structure [d(TGGGGT)](4).

Authors:  Bruno Pagano; Iolanda Fotticchia; Stefano De Tito; Carlo A Mattia; Luciano Mayol; Ettore Novellino; Antonio Randazzo; Concetta Giancola
Journal:  J Nucleic Acids       Date:  2010-05-30

7.  Telomerase is essential to alleviate pif1-induced replication stress at telomeres.

Authors:  Michael Chang; Brian Luke; Claudine Kraft; Zhijian Li; Matthias Peter; Joachim Lingner; Rodney Rothstein
Journal:  Genetics       Date:  2009-08-24       Impact factor: 4.562

8.  Yeast telomerase subunit Est1p has guanine quadruplex-promoting activity that is required for telomere elongation.

Authors:  Ming-Liang Zhang; Xia-Jing Tong; Xiao-Hong Fu; Bo O Zhou; Jianyong Wang; Xin-Hua Liao; Qian-Jin Li; Ning Shen; Jianping Ding; Jin-Qiu Zhou
Journal:  Nat Struct Mol Biol       Date:  2010-01-24       Impact factor: 15.369

Review 9.  Telomere length regulation: coupling DNA end processing to feedback regulation of telomerase.

Authors:  David Shore; Alessandro Bianchi
Journal:  EMBO J       Date:  2009-07-23       Impact factor: 11.598

10.  Genome-wide colonization of gene regulatory elements by G4 DNA motifs.

Authors:  Zhuo Du; Yiqiang Zhao; Ning Li
Journal:  Nucleic Acids Res       Date:  2009-09-16       Impact factor: 16.971

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