Literature DB >> 16506092

Dynamic nucleosomes.

Karolin Luger1.   

Abstract

It is now widely recognized that the packaging of genomic DNA together with core histones, linker histones, and other functional proteins into chromatin profoundly influences nuclear processes such as transcription, replication, repair and recombination. How chromatin structure modulates the expression and maintenance of knowledge encoded in eukaryotic genomes, and how these processes take place within the context of a highly complex and compacted genomic chromatin environment remains a major unresolved question in biology. Here we review recent advances in our understanding of how nucleosome and chromatin structure may have to adapt to promote these vital functions.

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Year:  2006        PMID: 16506092     DOI: 10.1007/s10577-005-1026-1

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  82 in total

1.  Rapid exchange of histone H1.1 on chromatin in living human cells.

Authors:  M A Lever; J P Th'ng; X Sun; M J Hendzel
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

2.  Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes.

Authors:  K J Polach; P T Lowary; J Widom
Journal:  J Mol Biol       Date:  2000-04-28       Impact factor: 5.469

3.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

4.  Sin mutations alter inherent nucleosome mobility.

Authors:  Andrew Flaus; Chantal Rencurel; Helder Ferreira; Nicola Wiechens; Tom Owen-Hughes
Journal:  EMBO J       Date:  2004-01-15       Impact factor: 11.598

5.  Effects of HMGN1 on chromatin structure and SWI/SNF-mediated chromatin remodeling.

Authors:  David A Hill; Craig L Peterson; Anthony N Imbalzano
Journal:  J Biol Chem       Date:  2005-10-27       Impact factor: 5.157

Review 6.  Acetylation of yeast histone H4 lysine 16: a switch for protein interactions in heterochromatin and euchromatin.

Authors:  C B Millar; S K Kurdistani; M Grunstein
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2004

Review 7.  The histone tails of the nucleosome.

Authors:  K Luger; T J Richmond
Journal:  Curr Opin Genet Dev       Date:  1998-04       Impact factor: 5.578

8.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

9.  Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation.

Authors:  K J Polach; J Widom
Journal:  J Mol Biol       Date:  1995-11-24       Impact factor: 5.469

10.  The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays.

Authors:  Faye Gordon; Karolin Luger; Jeffrey C Hansen
Journal:  J Biol Chem       Date:  2005-07-19       Impact factor: 5.157

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  78 in total

1.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

2.  Rotational position of a 5-methylcytosine-containing cyclobutane pyrimidine dimer in a nucleosome greatly affects its deamination rate.

Authors:  Qian Song; Vincent J Cannistraro; John-Stephen Taylor
Journal:  J Biol Chem       Date:  2010-12-15       Impact factor: 5.157

3.  Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106.

Authors:  Dan Su; Qi Hu; Qing Li; James R Thompson; Gaofeng Cui; Ahmed Fazly; Brian A Davies; Maria Victoria Botuyan; Zhiguo Zhang; Georges Mer
Journal:  Nature       Date:  2012-02-05       Impact factor: 49.962

4.  Transcription and epigenetic profile of the promoter, first exon and first intron of the human tyrosine hydroxylase gene.

Authors:  Gaetano Romano; Marcella Macaluso; Chiara Lucchetti; Lorraine Iacovitti
Journal:  J Cell Physiol       Date:  2007-05       Impact factor: 6.384

Review 5.  Transcription through chromatin by RNA polymerase II: histone displacement and exchange.

Authors:  Olga I Kulaeva; Daria A Gaykalova; Vasily M Studitsky
Journal:  Mutat Res       Date:  2007-01-21       Impact factor: 2.433

6.  Protein-protein Förster resonance energy transfer analysis of nucleosome core particles containing H2A and H2A.Z.

Authors:  Duane A Hoch; Jessica J Stratton; Lisa M Gloss
Journal:  J Mol Biol       Date:  2007-06-02       Impact factor: 5.469

7.  UV sensitive mutations in histone H3 in Saccharomyces cerevisiae that alter specific K79 methylation states genetically act through distinct DNA repair pathways.

Authors:  Margery L Evans; Lindsey J Bostelman; Ashley M Albrecht; Andrew M Keller; Natasha T Strande; Jeffrey S Thompson
Journal:  Curr Genet       Date:  2008-03-08       Impact factor: 3.886

8.  Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation.

Authors:  Nick Kepper; Dietrich Foethke; Rene Stehr; Gero Wedemann; Karsten Rippe
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

9.  Acetylation of histone H3 lysine 56 regulates replication-coupled nucleosome assembly.

Authors:  Qing Li; Hui Zhou; Hugo Wurtele; Brian Davies; Bruce Horazdovsky; Alain Verreault; Zhiguo Zhang
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

Review 10.  Analysis of epigenetic alterations to chromatin during development.

Authors:  Meghan E Minard; Abhinav K Jain; Michelle Craig Barton
Journal:  Genesis       Date:  2009-08       Impact factor: 2.487

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