Literature DB >> 14709046

A highly potent non-nucleoside adenosine deaminase inhibitor: efficient drug discovery by intentional lead hybridization.

Tadashi Terasaka1, Takayoshi Kinoshita, Masako Kuno, Isao Nakanishi.   

Abstract

We disclose herein the rapid discovery of the first highly potent (Ki = 7.7 nM) non-nucleoside adenosine deaminase (ADA) inhibitor based on the rational hybridization of two structurally distinct leads. Two micromolar inhibitors were discovered by a parallel rational design and random screening program, and individual crystal structures of bovine ADA in complexation with these inhibitors revealed several unknown binding sites and distinct binding modes. Using this information as the starting point, highly effective lead hybridization was achieved in only two structure-based drug design iterations. The conceptual approach illustrated by this example promises to be broadly useful in the search for new chemical entities and can contribute greatly to improve the overall efficiency and speed of drug discovery.

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Year:  2004        PMID: 14709046     DOI: 10.1021/ja038606l

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

1.  Sampling protein motion and solvent effect during ligand binding.

Authors:  Vittorio Limongelli; Luciana Marinelli; Sandro Cosconati; Concettina La Motta; Stefania Sartini; Laura Mugnaini; Federico Da Settimo; Ettore Novellino; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-11       Impact factor: 11.205

2.  Crystallization and preliminary X-ray crystallographic analysis of the tRNA-specific adenosine deaminase from Streptococcus pyogenes.

Authors:  Min-Je Ku; Won-Ho Lee; Ki-hyun Nam; Kyeong-hee Rhee; Ki-Seog Lee; Eunice EunKyung Kim; Myung-Hee Yu; Kwang Yeon Hwang
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-03-12

3.  A detailed thermodynamic profile of cyclopentyl and isopropyl derivatives binding to CK2 kinase.

Authors:  Takayoshi Kinoshita; Yusuke Sekiguchi; Harumi Fukada; Tetsuko Nakaniwa; Toshiji Tada; Shinya Nakamura; Kazuo Kitaura; Hiroaki Ohno; Yamato Suzuki; Akira Hirasawa; Isao Nakanishi; Gozoh Tsujimoto
Journal:  Mol Cell Biochem       Date:  2011-07-07       Impact factor: 3.396

4.  Pharmacophore modeling using site-identification by ligand competitive saturation (SILCS) with multiple probe molecules.

Authors:  Wenbo Yu; Sirish Kaushik Lakkaraju; E Prabhu Raman; Lei Fang; Alexander D MacKerell
Journal:  J Chem Inf Model       Date:  2015-02-06       Impact factor: 4.956

5.  Virtual ligand screening against comparative protein structure models.

Authors:  Hao Fan; John J Irwin; Andrej Sali
Journal:  Methods Mol Biol       Date:  2012

6.  Molecular docking screens using comparative models of proteins.

Authors:  Hao Fan; John J Irwin; Benjamin M Webb; Gerhard Klebe; Brian K Shoichet; Andrej Sali
Journal:  J Chem Inf Model       Date:  2009-11       Impact factor: 4.956

7.  Structures of substrate- and inhibitor-bound adenosine deaminase from a human malaria parasite show a dramatic conformational change and shed light on drug selectivity.

Authors:  Eric T Larson; Wei Deng; Brian E Krumm; Alberto Napuli; Natascha Mueller; Wesley C Van Voorhis; Frederick S Buckner; Erkang Fan; Angela Lauricella; George DeTitta; Joseph Luft; Frank Zucker; Wim G J Hol; Christophe L M J Verlinde; Ethan A Merritt
Journal:  J Mol Biol       Date:  2008-06-24       Impact factor: 5.469

8.  DINC: a new AutoDock-based protocol for docking large ligands.

Authors:  Ankur Dhanik; John S McMurray; Lydia E Kavraki
Journal:  BMC Struct Biol       Date:  2013-11-08

Review 9.  Role of Copper in the Onset of Alzheimer's Disease Compared to Other Metals.

Authors:  Soghra Bagheri; Rosanna Squitti; Thomas Haertlé; Mariacristina Siotto; Ali A Saboury
Journal:  Front Aging Neurosci       Date:  2018-01-23       Impact factor: 5.750

10.  Synthesis of chiral 1,4-disubstituted-1,2,3-triazole derivatives from amino acids.

Authors:  Michael Klein; Karin Krainz; Itedale Namro Redwan; Peter Dinér; Morten Grøtli
Journal:  Molecules       Date:  2009-12-09       Impact factor: 4.411

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