Literature DB >> 16511045

Crystallization and preliminary X-ray crystallographic analysis of the tRNA-specific adenosine deaminase from Streptococcus pyogenes.

Min-Je Ku1, Won-Ho Lee, Ki-hyun Nam, Kyeong-hee Rhee, Ki-Seog Lee, Eunice EunKyung Kim, Myung-Hee Yu, Kwang Yeon Hwang.   

Abstract

The tRNA-specific adenosine deaminase from the pathogenic bacteria Streptococcus pyogenes (spTAD) has been overexpressed in Escherichia coli and crystallized in the presence of Zn2+ ion at 295 K using ammonium sulfate as a precipitant. Flash-cooled crystals of spTAD diffracted to 2.0 A using 30%(v/v) glycerol as a cryoprotectant. X-ray diffraction data have been collected to 2.0 A using synchrotron radiation. The crystal belongs to the tetragonal space group P4(2)2(1)2, with unit-cell parameters a = b = 81.042, c = 81.270 A. The asymmetric unit contains one subunit of spTAD, with a corresponding crystal volume per protein weight (VM) of 3.3 A3 Da(-1) and a solvent content of 62.7%.

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Year:  2005        PMID: 16511045      PMCID: PMC1952419          DOI: 10.1107/S1744309105007311

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  The structure of Escherichia coli cytosine deaminase.

Authors:  Gregory C Ireton; Gerry McDermott; Margaret E Black; Barry L Stoddard
Journal:  J Mol Biol       Date:  2002-01-25       Impact factor: 5.469

2.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  Complete genome sequence of an M1 strain of Streptococcus pyogenes.

Authors:  J J Ferretti; W M McShan; D Ajdic; D J Savic; G Savic; K Lyon; C Primeaux; S Sezate; A N Suvorov; S Kenton; H S Lai; S P Lin; Y Qian; H G Jia; F Z Najar; Q Ren; H Zhu; L Song; J White; X Yuan; S W Clifton; B A Roe; R McLaughlin
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

5.  An adenosine deaminase that generates inosine at the wobble position of tRNAs.

Authors:  A P Gerber; W Keller
Journal:  Science       Date:  1999-11-05       Impact factor: 47.728

6.  A novel form of tissue-specific RNA processing produces apolipoprotein-B48 in intestine.

Authors:  L M Powell; S C Wallis; R J Pease; Y H Edwards; T J Knott; J Scott
Journal:  Cell       Date:  1987-09-11       Impact factor: 41.582

7.  Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain.

Authors:  David J Banks; Stephen F Porcella; Kent D Barbian; Stephen B Beres; Lauren E Philips; Jovanka M Voyich; Frank R DeLeo; Judith M Martin; Greg A Somerville; James M Musser
Journal:  J Infect Dis       Date:  2004-07-20       Impact factor: 5.226

8.  tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli.

Authors:  Jeannette Wolf; André P Gerber; Walter Keller
Journal:  EMBO J       Date:  2002-07-15       Impact factor: 11.598

9.  A highly potent non-nucleoside adenosine deaminase inhibitor: efficient drug discovery by intentional lead hybridization.

Authors:  Tadashi Terasaka; Takayoshi Kinoshita; Masako Kuno; Isao Nakanishi
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

10.  Selenomethionyl proteins produced for analysis by multiwavelength anomalous diffraction (MAD): a vehicle for direct determination of three-dimensional structure.

Authors:  W A Hendrickson; J R Horton; D M LeMaster
Journal:  EMBO J       Date:  1990-05       Impact factor: 11.598

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