Literature DB >> 18602399

Structures of substrate- and inhibitor-bound adenosine deaminase from a human malaria parasite show a dramatic conformational change and shed light on drug selectivity.

Eric T Larson1, Wei Deng, Brian E Krumm, Alberto Napuli, Natascha Mueller, Wesley C Van Voorhis, Frederick S Buckner, Erkang Fan, Angela Lauricella, George DeTitta, Joseph Luft, Frank Zucker, Wim G J Hol, Christophe L M J Verlinde, Ethan A Merritt.   

Abstract

Plasmodium and other apicomplexan parasites are deficient in purine biosynthesis, relying instead on the salvage of purines from their host environment. Therefore, interference with the purine salvage pathway is an attractive therapeutic target. The plasmodial enzyme adenosine deaminase (ADA) plays a central role in purine salvage and, unlike mammalian ADA homologs, has a further secondary role in methylthiopurine recycling. For this reason, plasmodial ADA accepts a wider range of substrates, as it is responsible for deamination of both adenosine and 5'-methylthioadenosine. The latter substrate is not accepted by mammalian ADA homologs. The structural basis for this natural difference in specificity between plasmodial and mammalian ADA has not been well understood. We now report crystal structures of Plasmodium vivax ADA in complex with adenosine, guanosine, and the picomolar inhibitor 2'-deoxycoformycin. These structures highlight a drastic conformational change in plasmodial ADA upon substrate binding that has not been observed for mammalian ADA enzymes. Further, these complexes illuminate the structural basis for the differential substrate specificity and potential drug selectivity between mammalian and parasite enzymes.

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Year:  2008        PMID: 18602399      PMCID: PMC2600493          DOI: 10.1016/j.jmb.2008.06.048

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  37 in total

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Authors:  D K Wilson; F A Quiocho
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4.  Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.

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Journal:  Mol Biochem Parasitol       Date:  2006-11-13       Impact factor: 1.759

5.  Transition state analogue inhibitors of purine nucleoside phosphorylase from Plasmodium falciparum.

Authors:  Gregory A Kicska; Peter C Tyler; Gary B Evans; Richard H Furneaux; Kami Kim; Vern L Schramm
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6.  Rational design of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors: predicting enzyme conformational change and metabolism.

Authors:  Tadashi Terasaka; Kiyoshi Tsuji; Takeshi Kato; Isao Nakanishi; Takayoshi Kinoshita; Yasuko Kato; Masako Kuno; Takeshi Inoue; Kohichiro Tanaka; Katsuya Nakamura
Journal:  J Med Chem       Date:  2005-07-28       Impact factor: 7.446

7.  Targeting a novel Plasmodium falciparum purine recycling pathway with specific immucillins.

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Journal:  J Biol Chem       Date:  2004-12-02       Impact factor: 5.157

8.  Structure-based design and synthesis of non-nucleoside, potent, and orally bioavailable adenosine deaminase inhibitors.

Authors:  Tadashi Terasaka; Hiroyuki Okumura; Kiyoshi Tsuji; Takeshi Kato; Isao Nakanishi; Takayoshi Kinoshita; Yasuko Kato; Masako Kuno; Nobuo Seki; Yoshinori Naoe; Takeshi Inoue; Kohichiro Tanaka; Katsuya Nakamura
Journal:  J Med Chem       Date:  2004-05-20       Impact factor: 7.446

9.  Structure of bovine adenosine deaminase complexed with 6-hydroxy-1,6-dihydropurine riboside.

Authors:  Takayoshi Kinoshita; Nobuya Nishio; Isao Nakanishi; Akihiro Sato; Takashi Fujii
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-01-23

10.  A highly potent non-nucleoside adenosine deaminase inhibitor: efficient drug discovery by intentional lead hybridization.

Authors:  Tadashi Terasaka; Takayoshi Kinoshita; Masako Kuno; Isao Nakanishi
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

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  12 in total

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2.  Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine.

Authors:  Alissa M Goble; Zhening Zhang; J Michael Sauder; Stephen K Burley; Subramanyam Swaminathan; Frank M Raushel
Journal:  Biochemistry       Date:  2011-07-06       Impact factor: 3.162

3.  Structural basis for the growth factor activity of human adenosine deaminase ADA2.

Authors:  Anton V Zavialov; Xiaodi Yu; Dorothe Spillmann; Grégoire Lauvau; Andrey V Zavialov
Journal:  J Biol Chem       Date:  2010-02-09       Impact factor: 5.157

4.  Hydrogen-Deuterium Exchange within Adenosine Deaminase, a TIM Barrel Hydrolase, Identifies Networks for Thermal Activation of Catalysis.

Authors:  Shuaihua Gao; Emily J Thompson; Samuel L Barrow; Wenju Zhang; Anthony T Iavarone; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2020-11-12       Impact factor: 15.419

5.  Adenine aminohydrolase from Leishmania donovani: unique enzyme in parasite purine metabolism.

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Journal:  J Biol Chem       Date:  2012-01-11       Impact factor: 5.157

6.  The adenosine deaminases of Plasmodium vivax and Plasmodium falciparum exhibit surprising differences in ligand specificity.

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Journal:  J Mol Graph Model       Date:  2012-02-28       Impact factor: 2.518

7.  Crystal structure of a bacterial phosphoglucomutase, an enzyme involved in the virulence of multiple human pathogens.

Authors:  Ritcha Mehra-Chaudhary; Jacob Mick; John J Tanner; Michael T Henzl; Lesa J Beamer
Journal:  Proteins       Date:  2011-01-18

Review 8.  New medicines to improve control and contribute to the eradication of malaria.

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Journal:  Nat Rev Drug Discov       Date:  2009-10-16       Impact factor: 84.694

Review 9.  Enzymatic Transition States and Drug Design.

Authors:  Vern L Schramm
Journal:  Chem Rev       Date:  2018-10-18       Impact factor: 60.622

10.  Structural and metabolic specificity of methylthiocoformycin for malarial adenosine deaminases.

Authors:  Meng-Chiao Ho; María B Cassera; Dennis C Madrid; Li-Min Ting; Peter C Tyler; Kami Kim; Steven C Almo; Vern L Schramm
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

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