Literature DB >> 22183533

Virtual ligand screening against comparative protein structure models.

Hao Fan1, John J Irwin, Andrej Sali.   

Abstract

Virtual ligand screening uses computation to discover new ligands of a protein by screening one or more of its structural models against a database of potential ligands. Comparative protein structure modeling extends the applicability of virtual screening beyond the atomic structures determined by X-ray crystallography or NMR spectroscopy. Here, we describe an integrated modeling and docking protocol, combining comparative modeling by MODELLER and virtual ligand screening by DOCK.

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Year:  2012        PMID: 22183533      PMCID: PMC3386294          DOI: 10.1007/978-1-61779-465-0_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  73 in total

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Review 5.  Structure-based strategies for drug design and discovery.

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6.  Rapid context-dependent ligand desolvation in molecular docking.

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7.  GPCR structure-based virtual screening approach for CB2 antagonist search.

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Review 8.  Novel strategies for the design of new potent and selective human A3 receptor antagonists: an update.

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Journal:  Mol Biochem Parasitol       Date:  2006-11-13       Impact factor: 1.759

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  6 in total

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3.  Structure based virtual screening of novel inhibitors against multidrug resistant superbugs.

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Journal:  Bioinformation       Date:  2012-05-15

4.  Unique identifiers for small molecules enable rigorous labeling of their atoms.

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5.  Building protein-protein interaction networks for Leishmania species through protein structural information.

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Journal:  BMC Bioinformatics       Date:  2018-03-06       Impact factor: 3.169

Review 6.  Targeting the C-Terminal Domain Small Phosphatase 1.

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Journal:  Life (Basel)       Date:  2020-05-08
  6 in total

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