Literature DB >> 14690431

Solvent and primary deuterium isotope effects show that lactate CH and OH bond cleavages are concerted in Y254F flavocytochrome b2, consistent with a hydride transfer mechanism.

Pablo Sobrado1, Paul F Fitzpatrick.   

Abstract

Yeast flavocytochrome b(2) catalyzes the oxidation of lactate to pyruvate; because of the wealth of structural and mechanistic information available, this enzyme has served as the model for the family of flavoproteins catalyzing oxidation of alpha-hydroxy acids. Primary deuterium and solvent isotope effects have now been used to analyze the effects of mutating the active site residue Tyr254 to phenylalanine. Both the V(max) and the V/K(lactate) values decrease about 40-fold in the mutant enzyme. The primary deuterium isotope effects on the V(max) and the V/K(lactate) values increase to 5.0, equivalent to the intrinsic isotope effect for the wild-type enzyme. In addition, both the V(max) and the V/K(lactate) values exhibit solvent isotope effects of 1.5. Measurement of the solvent isotope effect with deuterated lactate establishes that the primary and solvent isotope effects arise from the same chemical step, consistent with concerted cleavage of the lactate OH and CH bonds. The pH dependence of the mutant enzyme is not significantly different from that of the wild-type enzyme; this is most consistent with a requirement that the side chain of Tyr254 be uncharged for catalysis. The results support a hydride transfer mechanism for the mutant protein and, by extension, wild-type flavocytochrome b(2) and the other flavoproteins catalyzing oxidation of alpha-hydroxy acids.

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Year:  2003        PMID: 14690431      PMCID: PMC1630681          DOI: 10.1021/bi035546n

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  31 in total

1.  Structure of an active soluble mutant of the membrane-associated (S)-mandelate dehydrogenase.

Authors:  N Sukumar; Y Xu; D L Gatti; B Mitra; F S Mathews
Journal:  Biochemistry       Date:  2001-08-21       Impact factor: 3.162

2.  Flavocytochrome b 2 or L-lactate cytochrome c reductase from yeast.

Authors:  F Labeyrie; A Baudras; F Lederer
Journal:  Methods Enzymol       Date:  1978       Impact factor: 1.600

3.  Purification and characterization of glycolic acid oxidase from pig liver.

Authors:  M Schuman; V Massey
Journal:  Biochim Biophys Acta       Date:  1971-03-10

Review 4.  Solvent isotope effects of enzyme systems.

Authors:  K B Schowen; R L Schowen
Journal:  Methods Enzymol       Date:  1982       Impact factor: 1.600

5.  Secondary deuterium and nitrogen-15 isotope effects in enzyme-catalyzed reactions. Chemical mechanism of liver alcohol dehydrogenase.

Authors:  P F Cook; N J Oppenheimer; W W Cleland
Journal:  Biochemistry       Date:  1981-03-31       Impact factor: 3.162

6.  Studies on the mechanism of action of the flavoenzyme lactate oxidase. Oxidation and elimination with beta-chlorolactate.

Authors:  C Walsh; O Lockridge; V Massey; R Abeles
Journal:  J Biol Chem       Date:  1973-10-25       Impact factor: 5.157

7.  The pH-effect on the rate of reaction of yeast L(+)-lactate dehydrogenase.

Authors:  Y Ogura; Y Ohta; T Nakamura
Journal:  J Biochem       Date:  1966-07       Impact factor: 3.387

8.  (S)-Mandelate dehydrogenase from Pseudomonas putida: mechanistic studies with alternate substrates and pH and kinetic isotope effects.

Authors:  I E Lehoux; B Mitra
Journal:  Biochemistry       Date:  1999-05-04       Impact factor: 3.162

9.  Flavocytochrome b2 (Baker's yeast). Deuterium isotope effect studied by rapid-kinetic methods as a probe for the mechanism of electron transfer.

Authors:  D Pompon; M Iwatsubo; F Lederer
Journal:  Eur J Biochem       Date:  1980-03

10.  Mechanistic deductions from isotope effects in multireactant enzyme mechanisms.

Authors:  P F Cook; W W Cleland
Journal:  Biochemistry       Date:  1981-03-31       Impact factor: 3.162

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  17 in total

1.  Experimental evidence for a hydride transfer mechanism in plant glycolate oxidase catalysis.

Authors:  Younès Dellero; Caroline Mauve; Edouard Boex-Fontvieille; Valérie Flesch; Mathieu Jossier; Guillaume Tcherkez; Michael Hodges
Journal:  J Biol Chem       Date:  2014-11-21       Impact factor: 5.157

2.  Mechanism of the Flavoprotein d-6-Hydroxynicotine Oxidase: Substrate Specificity, pH and Solvent Isotope Effects, and Roles of Key Active-Site Residues.

Authors:  Paul F Fitzpatrick; Vi Dougherty; Bishnu Subedi; Jesus Quilantan; Cynthia S Hinck; Andreina I Lujan; Jose R Tormos
Journal:  Biochemistry       Date:  2019-05-10       Impact factor: 3.162

3.  Isotope effects suggest a stepwise mechanism for berberine bridge enzyme.

Authors:  Helena M Gaweska; Kenneth M Roberts; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2012-09-06       Impact factor: 3.162

4.  pH and kinetic isotope effects on sarcosine oxidation by N-methyltryptophan oxidase.

Authors:  Erik C Ralph; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2005-03-01       Impact factor: 3.162

5.  Kinetic and isotopic characterization of L-proline dehydrogenase from Mycobacterium tuberculosis.

Authors:  Hector Serrano; John S Blanchard
Journal:  Biochemistry       Date:  2013-07-08       Impact factor: 3.162

6.  Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.

Authors:  Paul F Fitzpatrick; Dragana M Bozinovski; Annie Héroux; Patrick G Shaw; Michael P Valley; Allen M Orville
Journal:  Biochemistry       Date:  2007-11-10       Impact factor: 3.162

7.  Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1.

Authors:  Helena Gaweska; Michelle Henderson Pozzi; Dawn M Z Schmidt; Dewey G McCafferty; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

8.  Involvement of ionizable groups in catalysis of human liver glycolate oxidase.

Authors:  Andrea Pennati; Giovanni Gadda
Journal:  J Biol Chem       Date:  2009-09-16       Impact factor: 5.157

9.  Mechanistic and structural studies of H373Q flavocytochrome b2: effects of mutating the active site base.

Authors:  Chi-Lin Tsai; Kuppan Gokulan; Pablo Sobrado; James C Sacchettini; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2007-06-12       Impact factor: 3.162

Review 10.  Oxidation of amines by flavoproteins.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2009-08-03       Impact factor: 4.013

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