Literature DB >> 14681585

The 5'-3' exoribonuclease xrn-1 is essential for ventral epithelial enclosure during C. elegans embryogenesis.

Sarah Newbury1, Alison Woollard.   

Abstract

Ribonucleases have been studied in yeast and bacteria, but their biological significance to multicellular organisms is virtually unknown. However, there is increasing evidence that specific, timed transcript degradation is critical for regulation of many cellular processes, including early development and RNA interference. In this report we have investigated the effects of the 5'-3' exoribonuclease xrn-1 on the development of the nematode worm Caenorhabditis elegans. Silencing of xrn-1 expression using RNA interference results in embryos that fail to complete ventral enclosure, where the outer layer of cells normally closes over the mesoderm in a purse-string movement. Our data suggest that xrn-1 is involved in a critical aspect of epithelial movement and reveal an unexpected link between RNA stability and morphogenesis. Because xrn-1 is highly conserved in all eukaryotes, it is possible that it plays a role in similar morphological processes such as dorsal or thorax closure in Drosophila and wound healing in humans. In contrast to work in human tissue culture cells, where the 3'-5' pathway has been shown to be the most important for degradation of mRNAs, our work shows that the 5'-3' degradation pathway is crucially important at a critical stage of development in C. elegans. We have also investigated whether xrn-1 can influence the response of C. elegans to RNA interference. Our data indicate that xrn-1 plays a facilitating, but not crucial role in this process.

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Year:  2004        PMID: 14681585      PMCID: PMC1370518          DOI: 10.1261/rna.2195504

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  34 in total

1.  An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells.

Authors:  S M Hammond; E Bernstein; D Beach; G J Hannon
Journal:  Nature       Date:  2000-03-16       Impact factor: 49.962

2.  RNAi: double-stranded RNA directs the ATP-dependent cleavage of mRNA at 21 to 23 nucleotide intervals.

Authors:  P D Zamore; T Tuschl; P A Sharp; D P Bartel
Journal:  Cell       Date:  2000-03-31       Impact factor: 41.582

Review 3.  RNAi: nature abhors a double-strand.

Authors:  György Hutvágner; Phillip D Zamore
Journal:  Curr Opin Genet Dev       Date:  2002-04       Impact factor: 5.578

4.  Disruption of the gene XRN1, coding for a 5'----3' exoribonuclease, restricts yeast cell growth.

Authors:  F W Larimer; A Stevens
Journal:  Gene       Date:  1990-10-30       Impact factor: 3.688

5.  Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans.

Authors:  A Fire; S Xu; M K Montgomery; S A Kostas; S E Driver; C C Mello
Journal:  Nature       Date:  1998-02-19       Impact factor: 49.962

6.  The ephrin VAB-2/EFN-1 functions in neuronal signaling to regulate epidermal morphogenesis in C. elegans.

Authors:  I D Chin-Sang; S E George; M Ding; S L Moseley; A S Lynch; A D Chisholm
Journal:  Cell       Date:  1999-12-23       Impact factor: 41.582

7.  The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex.

Authors:  J S Anderson; R P Parker
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

8.  Rapid epithelial-sheet sealing in the Caenorhabditis elegans embryo requires cadherin-dependent filopodial priming.

Authors:  W B Raich; C Agbunag; J Hardin
Journal:  Curr Biol       Date:  1999-10-21       Impact factor: 10.834

9.  The Caenorhabditis elegans APC-related gene apr-1 is required for epithelial cell migration and Hox gene expression.

Authors:  E F Hoier; W A Mohler; S K Kim; A Hajnal
Journal:  Genes Dev       Date:  2000-04-01       Impact factor: 11.361

Review 10.  Turning clustering loops: sex determination in Caenorhabditis elegans.

Authors:  Elizabeth B Goodwin; Ronald E Ellis
Journal:  Curr Biol       Date:  2002-02-05       Impact factor: 10.834

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  18 in total

1.  Nematode m7GpppG and m3(2,2,7)GpppG decapping: activities in Ascaris embryos and characterization of C. elegans scavenger DcpS.

Authors:  Leah S Cohen; Claudette Mikhli; Cassandra Friedman; Marzena Jankowska-Anyszka; Janusz Stepinski; Edward Darzynkiewicz; Richard E Davis
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

2.  Caenorhabditis elegans decapping proteins: localization and functional analysis of Dcp1, Dcp2, and DcpS during embryogenesis.

Authors:  Sabbi Lall; Fabio Piano; Richard E Davis
Journal:  Mol Biol Cell       Date:  2005-10-05       Impact factor: 4.138

3.  MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies.

Authors:  Jidong Liu; Marco Antonio Valencia-Sanchez; Gregory J Hannon; Roy Parker
Journal:  Nat Cell Biol       Date:  2005-06-05       Impact factor: 28.824

4.  Structural requirements for Caenorhabditis elegans DcpS substrates based on fluorescence and HPLC enzyme kinetic studies.

Authors:  Anna Wypijewska; Elzbieta Bojarska; Janusz Stepinski; Marzena Jankowska-Anyszka; Jacek Jemielity; Richard E Davis; Edward Darzynkiewicz
Journal:  FEBS J       Date:  2010-06-08       Impact factor: 5.542

5.  ETHYLENE-INSENSITIVE5 encodes a 5'-->3' exoribonuclease required for regulation of the EIN3-targeting F-box proteins EBF1/2.

Authors:  Gabriela Olmedo; Hongwei Guo; Brian D Gregory; Saeid D Nourizadeh; Laura Aguilar-Henonin; Hongjiang Li; Fengying An; Plinio Guzman; Joseph R Ecker
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-18       Impact factor: 11.205

6.  Scavenger decapping activity facilitates 5' to 3' mRNA decay.

Authors:  Hudan Liu; Megerditch Kiledjian
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

7.  The exoribonuclease XRN4 is a component of the ethylene response pathway in Arabidopsis.

Authors:  Thomas Potuschak; Amérin Vansiri; Brad M Binder; Esther Lechner; Richard D Vierstra; Pascal Genschik
Journal:  Plant Cell       Date:  2006-11-03       Impact factor: 11.277

8.  Roles of a Trypanosoma brucei 5'->3' exoribonuclease homolog in mRNA degradation.

Authors:  Chi-Ho Li; Henriette Irmer; Drifa Gudjonsdottir-Planck; Simone Freese; Heike Salm; Simon Haile; Antonio M Estévez; Christine Clayton
Journal:  RNA       Date:  2006-10-31       Impact factor: 4.942

Review 9.  XRN 5'→3' exoribonucleases: structure, mechanisms and functions.

Authors:  Vinay K Nagarajan; Christopher I Jones; Sarah F Newbury; Pamela J Green
Journal:  Biochim Biophys Acta       Date:  2013-03-19

10.  Turnover in the Alps: an mRNA perspective. Workshops on mechanisms and regulation of mRNA turnover.

Authors:  Sarah F Newbury; Oliver Mühlemann; Georg Stoecklin
Journal:  EMBO Rep       Date:  2006-02       Impact factor: 8.807

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