Literature DB >> 14660410

Application of genome-wide expression analysis to identify molecular markers useful in monitoring industrial fermentations.

Vincent J Higgins1, Peter J Rogers, Ian W Dawes.   

Abstract

Genome-wide expression analysis of an industrial strain of Saccharomyces cerevisiae identified the YOR387c and YGL258w homologues as highly inducible in zinc-depleted conditions. Induction was specific for zinc deficiency and was dependent on Zap1p. The results indicate that these sequences may be valuable molecular markers for detecting zinc deficiency in industrial fermentations.

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Year:  2003        PMID： 14660410      PMCID： PMC310037          DOI： 10.1128/AEM.69.12.7535-7540.2003

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  23 in total

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Authors:  Roberto Pérez-Torrado; Purificación Carrasco; Agustín Aranda; José Gimeno-Alcañiz; José E Pérez-Ortín; Emilia Matallana; Marcel Lí del Olmo
Journal:  Syst Appl Microbiol       Date:  2002-04       Impact factor: 4.022

2.  Molecular analysis of maltotriose transport and utilization by Saccharomyces cerevisiae.

Authors:  Rachel E Day; Peter J Rogers; Ian W Dawes; Vincent J Higgins
Journal:  Appl Environ Microbiol       Date:  2002-11       Impact factor: 4.792

3.  Correlation between acetaldehyde and ethanol resistance and expression of HSP genes in yeast strains isolated during the biological aging of sherry wines.

Authors:  Agustín Aranda; Amparo Querol; Marcel li del Olmo
Journal:  Arch Microbiol       Date:  2002-02-01       Impact factor: 2.552

4.  Genomic expression programs in the response of yeast cells to environmental changes.

Authors:  A P Gasch; P T Spellman; C M Kao; O Carmel-Harel; M B Eisen; G Storz; D Botstein; P O Brown
Journal:  Mol Biol Cell       Date:  2000-12       Impact factor: 4.138

5.  Zinc transporters that regulate vacuolar zinc storage in Saccharomyces cerevisiae.

Authors:  C W MacDiarmid; L A Gaither; D Eide
Journal:  EMBO J       Date:  2000-06-15       Impact factor: 11.598

6.  Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway.

Authors:  T M Lamb; W Xu; A Diamond; A P Mitchell
Journal:  J Biol Chem       Date:  2000-10-24       Impact factor: 5.157

7.  Kinetics of active alpha-glucoside transport in Saccharomyces cerevisiae.

Authors:  B U Stambuk; P S de Araujo
Journal:  FEMS Yeast Res       Date:  2001-04       Impact factor: 2.796

8.  Hsf1p and Msn2/4p cooperate in the expression of Saccharomyces cerevisiae genes HSP26 and HSP104 in a gene- and stress type-dependent manner.

Authors:  M Amorós; F Estruch
Journal:  Mol Microbiol       Date:  2001-03       Impact factor: 3.501

9.  Identification of a fungal triacetylfusarinine C siderophore transport gene (TAF1) in Saccharomyces cerevisiae as a member of the major facilitator superfamily.

Authors:  P Heymann; J F Ernst; G Winkelmann
Journal:  Biometals       Date:  1999-12       Impact factor: 2.949

Review 10.  Transition metal transport in yeast.

Authors:  Anthony Van Ho; Diane McVey Ward; Jerry Kaplan
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500
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  12 in total

1.  Monitoring stress-related genes during the process of biomass propagation of Saccharomyces cerevisiae strains used for wine making.

Authors:  Roberto Pérez-Torrado; Jose M Bruno-Bárcena; Emilia Matallana
Journal:  Appl Environ Microbiol       Date:  2005-11       Impact factor: 4.792

2.  Filamentation Regulatory Pathways Control Adhesion-Dependent Surface Responses in Yeast.

Authors:  Jacky Chow; Izzy Starr; Sheida Jamalzadeh; Omar Muniz; Anuj Kumar; Omer Gokcumen; Denise M Ferkey; Paul J Cullen
Journal:  Genetics       Date:  2019-05-03       Impact factor: 4.562

3.  Repression of sulfate assimilation is an adaptive response of yeast to the oxidative stress of zinc deficiency.

Authors:  Chang-Yi Wu; Sanja Roje; Francisco J Sandoval; Amanda J Bird; Dennis R Winge; David J Eide
Journal:  J Biol Chem       Date:  2009-08-05       Impact factor: 5.157

Review 4.  Homeostatic and adaptive responses to zinc deficiency in Saccharomyces cerevisiae.

Authors:  David J Eide
Journal:  J Biol Chem       Date:  2009-04-10       Impact factor: 5.157

Review 5.  Regulation of cation balance in Saccharomyces cerevisiae.

Authors:  Martha S Cyert; Caroline C Philpott
Journal:  Genetics       Date:  2013-03       Impact factor: 4.562

6.  Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures.

Authors:  Raffaele De Nicola; Lucie A Hazelwood; Erik A F De Hulster; Michael C Walsh; Theo A Knijnenburg; Marcel J T Reinders; Graeme M Walker; Jack T Pronk; Jean-Marc Daran; Pascale Daran-Lapujade
Journal:  Appl Environ Microbiol       Date:  2007-10-12       Impact factor: 4.792

7.  Saccharomyces cerevisiae signature genes for predicting nitrogen deficiency during alcoholic fermentation.

Authors:  A Mendes-Ferreira; M del Olmo; J García-Martínez; E Jiménez-Martí; C Leão; A Mendes-Faia; J E Pérez-Ortín
Journal:  Appl Environ Microbiol       Date:  2007-06-29       Impact factor: 4.792

8.  Different reactive oxygen species lead to distinct changes of cellular metal ions in the eukaryotic model organism Saccharomyces cerevisiae.

Authors:  Ming J Wu; Patrick J O'Doherty; Patricia A Murphy; Victoria Lyons; Melinda Christophersen; Peter J Rogers; Trevor D Bailey; Vincent J Higgins
Journal:  Int J Mol Sci       Date:  2011-11-18       Impact factor: 5.923

9.  Differential control of Zap1-regulated genes in response to zinc deficiency in Saccharomyces cerevisiae.

Authors:  Chang-Yi Wu; Amanda J Bird; Lisa M Chung; Michael A Newton; Dennis R Winge; David J Eide
Journal:  BMC Genomics       Date:  2008-08-01       Impact factor: 3.969

10.  Physiological evaluation of the filamentous fungus Trichoderma reesei in production processes by marker gene expression analysis.

Authors:  Jari J Rautio; Michael Bailey; Teemu Kivioja; Hans Söderlund; Merja Penttilä; Markku Saloheimo
Journal:  BMC Biotechnol       Date:  2007-05-30       Impact factor: 2.563
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