Literature DB >> 14581188

Molecular simulation study of phospholipid bilayers and insights of the interactions with disaccharides.

Amadeu K Sum1, Roland Faller, Juan J de Pablo.   

Abstract

Molecular simulations of hydrated dipalmitoylphosphatidylcholine lipid bilayers have been performed for temperatures in the range of 250-450 K. The area per headgroup increases with temperature from 58 to 77 A(2). Other properties such as hydration number, alkyl tail order parameter, diffusion coefficients, and radial distribution functions exhibit a clear dependence on temperature. Simulations of bilayers have also been performed in the presence of two disaccharides, namely trehalose and sucrose, at concentrations of up to 18 wt % (lipid-free basis). The simulated area per headgroup of the bilayer is not affected by the presence of the disaccharides, suggesting that the overall structure of the bilayer remains undisturbed. The results of simulations reveal that the interaction of disaccharide molecules with the bilayer occurs at the surface of the bilayer, and it is governed by the formation of multiple hydrogen bonds to specific groups of the lipid. Disaccharide molecules are observed to adopt specific conformations to fit onto the surface topology of the bilayer, often interacting with up to three different lipids simultaneously. At high disaccharide concentrations, the results of simulations indicate that disaccharides can serve as an effective replacement for water under anhydrous conditions, which helps explain their effectiveness as lyophilization agents for liposomes and cells.

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Year:  2003        PMID: 14581188      PMCID: PMC1303564          DOI: 10.1016/s0006-3495(03)74706-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

Review 1.  Electrostatics calculations: recent methodological advances and applications to membranes.

Authors:  D J Tobias
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  Dynamical properties of phospholipid bilayers from computer simulation.

Authors:  U Essmann; M L Berkowitz
Journal:  Biophys J       Date:  1999-04       Impact factor: 4.033

3.  Molecular simulation of dioleoylphosphatidylcholine lipid bilayers at differing levels of hydration.

Authors:  R J Mashl; H L Scott; S Subramaniam; E Jakobsson
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

Review 4.  The trehalose myth revisited: introduction to a symposium on stabilization of cells in the dry state.

Authors:  J H Crowe; L M Crowe; A E Oliver; N Tsvetkova; W Wolkers; F Tablin
Journal:  Cryobiology       Date:  2001-09       Impact factor: 2.487

5.  Setting up and optimization of membrane protein simulations.

Authors:  José D Faraldo-Gómez; Graham R Smith; Mark S P Sansom
Journal:  Eur Biophys J       Date:  2002-02-19       Impact factor: 1.733

Review 6.  Computer simulation studies of model biological membranes.

Authors:  Leonor Saiz; Michael L Klein
Journal:  Acc Chem Res       Date:  2002-06       Impact factor: 22.384

7.  Molecular dynamics simulation of dipalmitoylphosphatidylcholine membrane with cholesterol sulfate.

Authors:  A M Smondyrev; M L Berkowitz
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

8.  Cholesterol effects on the phosphatidylcholine bilayer nonpolar region: a molecular simulation study.

Authors:  T Róg; M Pasenkiewicz-Gierula
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

9.  Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation.

Authors:  P B Moore; C F Lopez; M L Klein
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

Review 10.  Lipid bilayers, NMR relaxation, and computer simulations.

Authors:  Richard W Pastor; Richard M Venable; Scott E Feller
Journal:  Acc Chem Res       Date:  2002-06       Impact factor: 22.384

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  37 in total

1.  Interactions of liquid crystal-forming molecules with phospholipid bilayers studied by molecular dynamics simulations.

Authors:  Evelina B Kim; Nathan Lockwood; Manan Chopra; Orlando Guzmán; Nicholas L Abbott; Juan J de Pablo
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

2.  The alpha,alpha-(1-->1) linkage of trehalose is key to anhydrobiotic preservation.

Authors:  Fernando Albertorio; Vanessa A Chapa; Xin Chen; Arnaldo J Diaz; Paul S Cremer
Journal:  J Am Chem Soc       Date:  2007-08-04       Impact factor: 15.419

3.  A molecular view of melting in anhydrous phospholipidic membranes.

Authors:  M Doxastakis; V García Sakai; S Ohtake; J K Maranas; J J de Pablo
Journal:  Biophys J       Date:  2007-01-01       Impact factor: 4.033

4.  How alcohol chain-length and concentration modulate hydrogen bond formation in a lipid bilayer.

Authors:  Allison N Dickey; Roland Faller
Journal:  Biophys J       Date:  2007-01-11       Impact factor: 4.033

5.  Amino-acid solvation structure in transmembrane helices from molecular dynamics simulations.

Authors:  Anna C V Johansson; Erik Lindahl
Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

6.  Effect of trehalose on a phospholipid membrane under mechanical stress.

Authors:  Cristina S Pereira; Philippe H Hünenberger
Journal:  Biophys J       Date:  2008-07-03       Impact factor: 4.033

Review 7.  Fluorescence techniques to study lipid dynamics.

Authors:  Erdinc Sezgin; Petra Schwille
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-11-01       Impact factor: 10.005

8.  Distribution, lateral mobility and function of membrane proteins incorporated into giant unilamellar vesicles.

Authors:  Mark K Doeven; Joost H A Folgering; Victor Krasnikov; Eric R Geertsma; Geert van den Bogaart; Bert Poolman
Journal:  Biophys J       Date:  2004-12-01       Impact factor: 4.033

9.  Molecular simulation study of structural and dynamic properties of mixed DPPC/DPPE bilayers.

Authors:  Sukit Leekumjorn; Amadeu K Sum
Journal:  Biophys J       Date:  2006-03-13       Impact factor: 4.033

10.  Simulations of Biomembranes and Water: Important Technical Aspects.

Authors:  Sandra V Bennun; Allison N Dickey; Chenyue Xing; Roland Faller
Journal:  Fluid Phase Equilib       Date:  2007-12-01       Impact factor: 2.775

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