Literature DB >> 16533838

Molecular simulation study of structural and dynamic properties of mixed DPPC/DPPE bilayers.

Sukit Leekumjorn1, Amadeu K Sum.   

Abstract

Molecular dynamics simulations have been used to study structural and dynamic properties of fully hydrated mixed 1,2-dipalmitoyl-sn-glycero-3-phosphocholine (DPPC) and 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine (DPPE) bilayers at 0, 25, 50, 75, and 100 mol % DPPE. Simulations were performed for 50 ns at 350 K and 1 bar for the liquid-crystalline state of the mixtures. Results show that the average area per headgroup reduces from 0.65 +/- 0.01 nm(2) in pure DPPC to 0.52 +/- 0.01 nm(2) in pure DPPE systems. The lipid tails become more ordered with increasing DPPE concentration, resulting in a slight increase in membrane thickness (3.43 +/- 0.01 nm in pure DPPC to 4.00 +/- 0.01 nm in pure DPPE). The calculated area per headgroup and order parameter for pure DPPE deviates significantly from available experimental measurements, suggesting that the force field employed requires further refinement. In-depth analysis of the hydrogen-bond distribution in DPPE molecules shows that the amine groups strongly interact with the phosphate and carbonyl groups through inter/intramolecular hydrogen bonds. This yields a bilayer structure with DPPE headgroups preferentially located near the lipid phosphate and ester oxygens. It is observed that increasing DPPE concentrations causes competitive hydrogen bonding between the amine groups (hydrogen-donor) and the phosphate/carbonyl groups or water (hydrogen-acceptor). Due to the increasing number of hydrogen-donors from DPPE molecules with increasing concentration, DPPE becomes more hydrated. Trajectory analysis shows that DPPE molecules in the lipid mixtures move laterally and randomly around the membrane surface and the movement becomes more localized with increasing DPPE concentrations. For the conditions and simulation time considered, no aggregation or phase separation was observed between DPPC and DPPE.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16533838      PMCID: PMC1459508          DOI: 10.1529/biophysj.105.076596

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  50 in total

Review 1.  Electrostatics calculations: recent methodological advances and applications to membranes.

Authors:  D J Tobias
Journal:  Curr Opin Struct Biol       Date:  2001-04       Impact factor: 6.809

2.  Multi-scale modeling of phase separation in mixed lipid bilayers.

Authors:  Qiang Shi; Gregory A Voth
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

3.  Area per lipid and acyl length distributions in fluid phosphatidylcholines determined by (2)H NMR spectroscopy.

Authors:  H I Petrache; S W Dodd; M F Brown
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

Review 4.  Calorimetric and molecular mechanics studies of the thermotropic phase behavior of membrane phospholipids.

Authors:  C Huang; S Li
Journal:  Biochim Biophys Acta       Date:  1999-11-16

5.  Roles of phosphatidylethanolamine and of its several biosynthetic pathways in Saccharomyces cerevisiae.

Authors:  R Birner; M Bürgermeister; R Schneiter; G Daum
Journal:  Mol Biol Cell       Date:  2001-04       Impact factor: 4.138

6.  Pseudomonas aeruginosa exhibits directed twitching motility up phosphatidylethanolamine gradients.

Authors:  D B Kearns; J Robinson; L J Shimkets
Journal:  J Bacteriol       Date:  2001-01       Impact factor: 3.490

7.  Analysis of phospholipid species in human blood using normal-phase liquid chromatography coupled with electrospray ionization ion-trap tandem mass spectrometry.

Authors:  S Uran; A Larsen; P B Jacobsen; T Skotland
Journal:  J Chromatogr B Biomed Sci Appl       Date:  2001-07-15

8.  Effect of angiotensin II non-peptide AT(1) antagonist losartan on phosphatidylethanolamine membranes.

Authors:  E Theodoropoulou; D Marsh
Journal:  Biochim Biophys Acta       Date:  2000-12-20

9.  Nuclear Overhauser enhancement spectroscopy cross-relaxation rates and ethanol distribution across membranes.

Authors:  Scott E Feller; Christopher A Brown; David T Nizza; Klaus Gawrisch
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

10.  Phosphatidylethanolamine has an essential role in Saccharomyces cerevisiae that is independent of its ability to form hexagonal phase structures.

Authors:  M K Storey; K L Clay; T Kutateladze; R C Murphy; M Overduin; D R Voelker
Journal:  J Biol Chem       Date:  2001-10-15       Impact factor: 5.157

View more
  28 in total

1.  A molecular dynamics investigation of lipid bilayer perturbation by PIP2.

Authors:  Dmitry Lupyan; Mihaly Mezei; Diomedes E Logothetis; Roman Osman
Journal:  Biophys J       Date:  2010-01-20       Impact factor: 4.033

2.  Concentration effects of sumatriptan on the properties of model membranes by molecular dynamics simulations.

Authors:  Irene Wood; Mónica Pickholz
Journal:  Eur Biophys J       Date:  2013-12       Impact factor: 1.733

3.  Structure Dependence of Pyridine and Benzene Derivatives on Interactions with Model Membranes.

Authors:  Benjamin J Peters; Cameron Van Cleave; Allison A Haase; John Peter B Hough; Keisha A Giffen-Kent; Gabriel M Cardiff; Audra G Sostarecz; Dean C Crick; Debbie C Crans
Journal:  Langmuir       Date:  2018-07-19       Impact factor: 3.882

4.  Molecular dynamics modeling of Pseudomonas aeruginosa outer membranes.

Authors:  Ao Li; Jeffrey W Schertzer; Xin Yong
Journal:  Phys Chem Chem Phys       Date:  2018-09-19       Impact factor: 3.676

5.  Lateral diffusion of membrane proteins: consequences of hydrophobic mismatch and lipid composition.

Authors:  Sivaramakrishnan Ramadurai; Ria Duurkens; Victor V Krasnikov; Bert Poolman
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

6.  Interactions of fatty acids with phosphatidylethanolamine membranes: X-ray diffraction and molecular dynamics studies.

Authors:  Arnau Cordomí; Jesús Prades; Juan Frau; Oliver Vögler; Sérgio S Funari; Juan J Perez; Pablo V Escribá; Francisca Barceló
Journal:  J Lipid Res       Date:  2009-11-19       Impact factor: 5.922

7.  Thermodynamic Characterization of Mixed Monolayers of a Novel Oxazolidine Derivative and Phospholipids.

Authors:  Felipe de Sá Rocha; Rafael Ramos da Silva; Gustavo Henrique Ribeiro Codeceira; Maria do Carmo Alves de Lima; Ivan da Rocha Pitta; Maria Danielly Lima de Oliveira; César Augusto Souza de Andrade
Journal:  J Membr Biol       Date:  2018-10-03       Impact factor: 1.843

8.  Molecular dynamics simulation of human serum paraoxonase 1 in DPPC bilayer reveals a critical role of transmembrane helix H1 for HDL association.

Authors:  Mahesh Chandra Patra; Surya Narayan Rath; Sukanta Kumar Pradhan; Jitendra Maharana; Sachinandan De
Journal:  Eur Biophys J       Date:  2013-12-03       Impact factor: 1.733

9.  Experimental and computational studies investigating trehalose protection of HepG2 cells from palmitate-induced toxicity.

Authors:  Sukit Leekumjorn; Yifei Wu; Amadeu K Sum; Christina Chan
Journal:  Biophys J       Date:  2007-12-20       Impact factor: 4.033

Review 10.  Acyl chain order parameter profiles in phospholipid bilayers: computation from molecular dynamics simulations and comparison with 2H NMR experiments.

Authors:  Louic S Vermeer; Bert L de Groot; Valérie Réat; Alain Milon; Jerzy Czaplicki
Journal:  Eur Biophys J       Date:  2007-06-28       Impact factor: 1.733

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.