Literature DB >> 12069634

Computer simulation studies of model biological membranes.

Leonor Saiz1, Michael L Klein.   

Abstract

This Account is focused on computer simulation studies of model biological membrane systems with potential applications in biomedical research. In the past decade, classical molecular dynamics has provided novel insights into the properties of model biomembrane systems, including the nature of the DNA-lipid interactions, the effect of pore-forming transmembrane peptides on the lipid environment, and the partitioning of volatile anesthetic molecules. Such simulations, employing full atomic detail, are typically restricted to systems of dimensions less than approximately 10 nm. Simplified models of the coarse-grain type have been intended to bridge the gap between full atomistic detail and the mesoscopic (micron) regime. The use of such models is illustrated with the example of anesthetics in a phospholipid bilayer.

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Year:  2002        PMID: 12069634     DOI: 10.1021/ar010167c

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  37 in total

1.  Molecular dynamics simulations of lipid membrane electroporation.

Authors:  Lucie Delemotte; Mounir Tarek
Journal:  J Membr Biol       Date:  2012-05-30       Impact factor: 1.843

2.  Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine.

Authors:  Jussi Aittoniemi; Perttu S Niemelä; Marja T Hyvönen; Mikko Karttunen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

3.  Atomistic simulation studies of cholesteryl oleates: model for the core of lipoprotein particles.

Authors:  Mikko Heikelä; Ilpo Vattulainen; Marja T Hyvönen
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

4.  Concentration effects of volatile anesthetics on the properties of model membranes: a coarse-grain approach.

Authors:  Mónica Pickholz; Leonor Saiz; Michael L Klein
Journal:  Biophys J       Date:  2004-12-21       Impact factor: 4.033

5.  The dynamic orientation of membrane-bound peptides: bridging simulations and experiments.

Authors:  Santi Esteban-Martín; Jesús Salgado
Journal:  Biophys J       Date:  2007-08-24       Impact factor: 4.033

Review 6.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

7.  Membrane perturbation action mode and structure-activity relationships of Protonectin, a novel antimicrobial peptide from the venom of the neotropical social wasp Agelaia pallipes pallipes.

Authors:  Kairong Wang; Wen Dang; Jiexi Yan; Ru Chen; Xin Liu; Wenjin Yan; Bangzhi Zhang; Junqiu Xie; Jindao Zhang; Rui Wang
Journal:  Antimicrob Agents Chemother       Date:  2013-07-08       Impact factor: 5.191

8.  Molecular dynamics simulations of the lipid bilayer edge.

Authors:  Frank Y Jiang; Yann Bouret; James T Kindt
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

9.  Structure and dynamics of sphingomyelin bilayer: insight gained through systematic comparison to phosphatidylcholine.

Authors:  Perttu Niemelä; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2004-08-17       Impact factor: 4.033

10.  Molecular aspects of the interaction between amphotericin B and a phospholipid bilayer: molecular dynamics studies.

Authors:  Kamil Sternal; Jacek Czub; Maciej Baginski
Journal:  J Mol Model       Date:  2004-04-30       Impact factor: 1.810

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