Literature DB >> 12069629

Lipid bilayers, NMR relaxation, and computer simulations.

Richard W Pastor1, Richard M Venable, Scott E Feller.   

Abstract

Brownian and molecular dynamics simulations of a lipid bilayer are described, and the calculated frequency-dependent (13)C NMR T(1) relaxation times are compared with experiment. A consistent model emerges. Through fast internal motions, individual lipids average themselves into relatively cylindrical shapes on the 100 ps time scale and "wobble" in a cone-like potential on the nanosecond time scale. These motions take place in a highly fluid environment, much like a liquid alkane. Lateral diffusion of the lipids is on a significantly longer time scale because of restrictions at the bilayer/water interface, not because the interior of the bilayer is highly viscous.

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Year:  2002        PMID: 12069629     DOI: 10.1021/ar0100529

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  35 in total

Review 1.  Structural dynamics of bio-macromolecules by NMR: the slowly relaxing local structure approach.

Authors:  Eva Meirovitch; Yury E Shapiro; Antonino Polimeno; Jack H Freed
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

2.  Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine.

Authors:  Jussi Aittoniemi; Perttu S Niemelä; Marja T Hyvönen; Mikko Karttunen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2006-11-17       Impact factor: 4.033

3.  Comparative molecular dynamics study of lipid membranes containing cholesterol and ergosterol.

Authors:  Jacek Czub; Maciej Baginski
Journal:  Biophys J       Date:  2006-01-06       Impact factor: 4.033

4.  Molecular dynamics simulations suggest a mechanism for translocation of the HIV-1 TAT peptide across lipid membranes.

Authors:  Henry D Herce; Angel E Garcia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-18       Impact factor: 11.205

Review 5.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

Review 6.  Modeling kinetics of subcellular disposition of chemicals.

Authors:  Stefan Balaz
Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

7.  Curvature forces in membrane lipid-protein interactions.

Authors:  Michael F Brown
Journal:  Biochemistry       Date:  2012-11-27       Impact factor: 3.162

8.  Structure and dynamics of model pore insertion into a membrane.

Authors:  Carlos F Lopez; Steve O Nielsen; Bernd Ensing; Preston B Moore; Michael L Klein
Journal:  Biophys J       Date:  2005-02-18       Impact factor: 4.033

9.  Dynamic structure of retinylidene ligand of rhodopsin probed by molecular simulations.

Authors:  Pick-Wei Lau; Alan Grossfield; Scott E Feller; Michael C Pitman; Michael F Brown
Journal:  J Mol Biol       Date:  2007-06-26       Impact factor: 5.469

10.  Structure and dynamics of sphingomyelin bilayer: insight gained through systematic comparison to phosphatidylcholine.

Authors:  Perttu Niemelä; Marja T Hyvönen; Ilpo Vattulainen
Journal:  Biophys J       Date:  2004-08-17       Impact factor: 4.033

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