Literature DB >> 10096903

Dynamical properties of phospholipid bilayers from computer simulation.

U Essmann1, M L Berkowitz.   

Abstract

We present the results of a 10-ns molecular dynamics simulation of a dipalmitoylphosphatidylcholine/water system. The main emphasis of the present study is on the investigation of the stability over a long time and the dynamic properties of the water/membrane system. The motion of the lipid molecules is characterized by the center of mass movement and the displacement of individual atom groups. Because of the slow movement of the headgroup atoms, their contributions to the dipole potential vary slowly and with a large amplitude. Nevertheless, the water molecules compensate the strong fluctuations and maintain an almost constant total dipole potential. From the lateral displacement of the center of masses, we calculate the lateral diffusion coefficient to be Dlat = (3 +/- 0.6) x 10(-7) cm2/s, in agreement with neutron scattering results. The rotational motion is also investigated in our simulations. The calculated value for the rotational diffusion coefficient parallel to the molecular long axis, D = (1.6 +/- 0.1) x 10(8) s-1, is in good agreement with the experiment.

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Year:  1999        PMID: 10096903      PMCID: PMC1300181          DOI: 10.1016/S0006-3495(99)77364-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

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Journal:  Biophys J       Date:  1992-05       Impact factor: 4.033

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Journal:  Chem Phys Lipids       Date:  1994-09-06       Impact factor: 3.329

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Authors:  P Nordera; M D Serra; G Menestrina
Journal:  Biophys J       Date:  1997-09       Impact factor: 3.699

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  34 in total

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Authors:  A M Smondyrev; M L Berkowitz
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5.  The implementation of slab geometry for membrane-channel molecular dynamics simulations.

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Authors:  Jung-Hsin Lin; Nathan A Baker; J Andrew McCammon
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

7.  Mesoscopic lateral diffusion in lipid bilayers.

Authors:  Gary S Ayton; Gregory A Voth
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

8.  Surface viscosity, diffusion, and intermonolayer friction: simulating sheared amphiphilic bilayers.

Authors:  S A Shkulipa; W K den Otter; W J Briels
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9.  Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation.

Authors:  P B Moore; C F Lopez; M L Klein
Journal:  Biophys J       Date:  2001-11       Impact factor: 4.033

10.  Molecular dynamics study of bipolar tetraether lipid membranes.

Authors:  Wataru Shinoda; Keiko Shinoda; Teruhiko Baba; Masuhiro Mikami
Journal:  Biophys J       Date:  2005-08-12       Impact factor: 4.033

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