Literature DB >> 14524934

Computational approach for modeling intra- and extracellular dynamics.

Julien Kockelkoren1, Herbert Levine, Wouter-Jan Rappel.   

Abstract

We introduce a phase-field approach for diffusion inside and outside a closed cell with damping and with source terms at the stationary interface. The method is compared to exact solutions (where possible) and the more traditional finite element method. It is shown to be very accurate, easy to implement, and computationally inexpensive. We apply our method to a recently introduced model for chemotaxis by Rappel et al. [Biophys. J. 83, 1361 (2002)].

Year:  2003        PMID: 14524934     DOI: 10.1103/PhysRevE.68.037702

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  21 in total

1.  Coupling actin flow, adhesion, and morphology in a computational cell motility model.

Authors:  Danying Shao; Herbert Levine; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

2.  Directional sensing in eukaryotic chemotaxis: a balanced inactivation model.

Authors:  Herbert Levine; David A Kessler; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-16       Impact factor: 11.205

3.  Receptor noise limitations on chemotactic sensing.

Authors:  Wouter-Jan Rappel; Herbert Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

4.  Modeling self-organized spatio-temporal patterns of PIP₃ and PTEN during spontaneous cell polarization.

Authors:  Fabian Knoch; Marco Tarantola; Eberhard Bodenschatz; Wouter-Jan Rappel
Journal:  Phys Biol       Date:  2014-07-15       Impact factor: 2.583

5.  A DIFFUSE-INTERFACE APPROACH FOR MODELING TRANSPORT, DIFFUSION AND ADSORPTION/DESORPTION OF MATERIAL QUANTITIES ON A DEFORMABLE INTERFACE.

Authors:  Knut Erik Teigen; Xiangrong Li; John Lowengrub; Fan Wang; Axel Voigt
Journal:  Commun Math Sci       Date:  2009-12       Impact factor: 1.120

6.  Polarity mechanisms such as contact inhibition of locomotion regulate persistent rotational motion of mammalian cells on micropatterns.

Authors:  Brian A Camley; Yunsong Zhang; Yanxiang Zhao; Bo Li; Eshel Ben-Jacob; Herbert Levine; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-25       Impact factor: 11.205

7.  Two-phase flow in complex geometries: A diffuse domain approach.

Authors:  S Aland; J Lowengrub; A Voigt
Journal:  Comput Model Eng Sci       Date:  2010       Impact factor: 1.593

8.  SOLVING PDES IN COMPLEX GEOMETRIES: A DIFFUSE DOMAIN APPROACH.

Authors:  X Li; J Lowengrub; A Rätz; A Voigt
Journal:  Commun Math Sci       Date:  2009-03-01       Impact factor: 1.120

9.  Computational model for cell morphodynamics.

Authors:  Danying Shao; Wouter-Jan Rappel; Herbert Levine
Journal:  Phys Rev Lett       Date:  2010-09-02       Impact factor: 9.161

10.  Mechanisms of Cell Polarization.

Authors:  Wouter-Jan Rappel; Leah Edelstein-Keshet
Journal:  Curr Opin Syst Biol       Date:  2017-04-12
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