Literature DB >> 20867552

Computational model for cell morphodynamics.

Danying Shao1, Wouter-Jan Rappel, Herbert Levine.   

Abstract

We develop a computational model, based on the phase-field method, for cell morphodynamics and apply it to fish keratocytes. Our model incorporates the membrane bending force and the surface tension and enforces a constant area. Furthermore, it implements a cross-linked actin filament field and an actin bundle field that are responsible for the protrusion and retraction forces, respectively. We show that our model predicts steady state cell shapes with a wide range of aspect ratios, depending on system parameters. Furthermore, we find that the dependence of the cell speed on this aspect ratio matches experimentally observed data.

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Year:  2010        PMID: 20867552      PMCID: PMC3048783          DOI: 10.1103/PhysRevLett.105.108104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  28 in total

1.  Phase-field model for Hele-Shaw flows with arbitrary viscosity contrast. I. Theoretical approach.

Authors:  R Folch; J Casademunt; A Hernández-Machado; L Ramírez-Piscina
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-08

2.  Tumbling of vesicles under shear flow within an advected-field approach.

Authors:  T Biben; C Misbah
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-03-17

3.  Directional sensing in eukaryotic chemotaxis: a balanced inactivation model.

Authors:  Herbert Levine; David A Kessler; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-16       Impact factor: 11.205

4.  Mechanism of shape determination in motile cells.

Authors:  Kinneret Keren; Zachary Pincus; Greg M Allen; Erin L Barnhart; Gerard Marriott; Alex Mogilner; Julie A Theriot
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

Review 5.  Mathematics of cell motility: have we got its number?

Authors:  Alex Mogilner
Journal:  J Math Biol       Date:  2008-05-07       Impact factor: 2.259

6.  Interactions between myosin and actin crosslinkers control cytokinesis contractility dynamics and mechanics.

Authors:  Elizabeth M Reichl; Yixin Ren; Mary K Morphew; Michael Delannoy; Janet C Effler; Kristine D Girard; Srikanth Divi; Pablo A Iglesias; Scot C Kuo; Douglas N Robinson
Journal:  Curr Biol       Date:  2008-03-27       Impact factor: 10.834

7.  Persistent, directional motility of cells and cytoplasmic fragments in the absence of microtubules.

Authors:  U Euteneuer; M Schliwa
Journal:  Nature       Date:  1984 Jul 5-11       Impact factor: 49.962

8.  A micromechanic study of cell polarity and plasma membrane cell body coupling in Dictyostelium.

Authors:  R Merkel; R Simson; D A Simson; M Hohenadl; A Boulbitch; E Wallraff; E Sackmann
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

9.  Force transmission in migrating cells.

Authors:  Maxime F Fournier; Roger Sauser; Davide Ambrosi; Jean-Jacques Meister; Alexander B Verkhovsky
Journal:  J Cell Biol       Date:  2010-01-25       Impact factor: 10.539

10.  Modeling cellular deformations using the level set formalism.

Authors:  Liu Yang; Janet C Effler; Brett L Kutscher; Sarah E Sullivan; Douglas N Robinson; Pablo A Iglesias
Journal:  BMC Syst Biol       Date:  2008-07-24
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  64 in total

1.  Model for self-polarization and motility of keratocyte fragments.

Authors:  Falko Ziebert; Sumanth Swaminathan; Igor S Aranson
Journal:  J R Soc Interface       Date:  2011-10-19       Impact factor: 4.118

2.  Coupling actin flow, adhesion, and morphology in a computational cell motility model.

Authors:  Danying Shao; Herbert Levine; Wouter-Jan Rappel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-09       Impact factor: 11.205

3.  Modelling cell motility and chemotaxis with evolving surface finite elements.

Authors:  Charles M Elliott; Björn Stinner; Chandrasekhar Venkataraman
Journal:  J R Soc Interface       Date:  2012-06-06       Impact factor: 4.118

4.  Self-organized cell motility from motor-filament interactions.

Authors:  XinXin Du; Konstantin Doubrovinski; Miriam Osterfield
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

5.  A self-consistent phase-field approach to implicit solvation of charged molecules with Poisson-Boltzmann electrostatics.

Authors:  Hui Sun; Jiayi Wen; Yanxiang Zhao; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2015-12-28       Impact factor: 3.488

6.  Signaling networks and cell motility: a computational approach using a phase field description.

Authors:  Wieland Marth; Axel Voigt
Journal:  J Math Biol       Date:  2013-07-09       Impact factor: 2.259

7.  Phase-field approach to implicit solvation of biomolecules with Coulomb-field approximation.

Authors:  Yanxiang Zhao; Yuen-Yick Kwan; Jianwei Che; Bo Li; J Andrew McCammon
Journal:  J Chem Phys       Date:  2013-07-14       Impact factor: 3.488

8.  Variational Implicit Solvation with Solute Molecular Mechanics: From Diffuse-Interface to Sharp-Interface Models.

Authors:  Bo Li; Yanxiang Zhao
Journal:  SIAM J Appl Math       Date:  2013       Impact factor: 2.080

9.  Redundant mechanisms for stable cell locomotion revealed by minimal models.

Authors:  Charles W Wolgemuth; Jelena Stajic; Alex Mogilner
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

10.  Continuum modeling and numerical simulation of cell motility.

Authors:  Neil Hodge; Panayiotis Papadopoulos
Journal:  J Math Biol       Date:  2011-06-28       Impact factor: 2.259

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