Literature DB >> 14513221

Exploiting plant somatic radiation hybrids for physical mapping of expressed sequence tags.

J Wardrop1, J Fuller, W Powell, G C Machray.   

Abstract

Methods are described for the optimisation of the generation of radiation hybrids suitable for physical mapping of a plant (barley) genome. A combination of PCR-based technologies, involving the use of whole genome, mixed primer and hemi-nested primer amplifications, can greatly extend their utility for the physical mapping of expressed sequence tags (ESTs). Using panels of hybrids and ESTs, donor DNA retention and individual marker retention frequencies for the expressed portion of the barley genome in the hybrids were estimated.

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Year:  2003        PMID： 14513221     DOI： 10.1007/s00122-003-1434-6

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN： 0040-5752            Impact factor:   5.699


  18 in total

1.  Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints.

Authors:  G Künzel; L Korzun; A Meister
Journal:  Genetics       Date:  2000-01       Impact factor: 4.562

2.  A high-resolution radiation hybrid map of the human genome draft sequence.

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Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

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Journal:  Nature       Date:  1975-06-26       Impact factor: 49.962

4.  A radiation hybrid map of the rat genome containing 5,255 markers.

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Journal:  Nat Genet       Date:  1999-05       Impact factor: 38.330

5.  Whole genome amplification from a single cell: implications for genetic analysis.

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Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

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Authors:  M Boehnke; K Lange; D R Cox
Journal:  Am J Hum Genet       Date:  1991-12       Impact factor: 11.025

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Authors:  K Lange; M Boehnke; D R Cox; K L Lunetta
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Journal:  Dev Biol       Date:  1973-07       Impact factor: 3.582

9.  Nutritional requirements of protoplast-derived, haploid tobacco cells grown at low cell densities in liquid medium.

Authors:  M Caboche
Journal:  Planta       Date:  1980-06       Impact factor: 4.116

10.  Stable transformation of barley via PEG-induced direct DNA uptake into protoplasts.

Authors:  P A Lazzeri; R Brettschneider; R Lührs; H Lörz
Journal:  Theor Appl Genet       Date:  1991-04       Impact factor: 5.699
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  7 in total

1.  High-resolution radiation hybrid map of wheat chromosome 1D.

Authors:  Venu Kalavacharla; Khwaja Hossain; Yong Gu; Oscar Riera-Lizarazu; M Isabel Vales; Suresh Bhamidimarri; Jose L Gonzalez-Hernandez; Shivcharan S Maan; Shahryar F Kianian
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

Review 2.  Molecular markers from the transcribed/expressed region of the genome in higher plants.

Authors:  P K Gupta; S Rustgi
Journal:  Funct Integr Genomics       Date:  2004-04-17       Impact factor: 3.410

3.  Physical mapping of chromosome 4J of Thinopyrum bessarabicum using gamma radiation-induced aberrations.

Authors:  Jing Pu; Qing Wang; Yuefeng Shen; Lifang Zhuang; Chenxu Li; Mengfa Tan; Tongde Bie; Chenggen Chu; Zengjun Qi
Journal:  Theor Appl Genet       Date:  2015-04-08       Impact factor: 5.699

4.  Genetic characterization of asymmetric somatic hybrids between Bupleurum scorzonerifolium Willd and Triticum aestivum L.: potential application to the study of the wheat genome.

Authors:  Chuanen Zhou; Guangmin Xia; Daying Zhi; Ying Chen
Journal:  Planta       Date:  2005-11-04       Impact factor: 4.116

5.  An alternative to radiation hybrid mapping for large-scale genome analysis in barley.

Authors:  Ali Masoudi-Nejad; Shuhei Nasuda; Marie-Therese Bihoreau; Robbie Waugh; Takashi Ryu Endo
Journal:  Mol Genet Genomics       Date:  2005-10-18       Impact factor: 3.291

6.  Endosperm tolerance of paternal aneuploidy allows radiation hybrid mapping of the wheat D-genome and a measure of γ ray-induced chromosome breaks.

Authors:  Vijay K Tiwari; Oscar Riera-Lizarazu; Hilary L Gunn; Kasandra Lopez; M Javed Iqbal; Shahryar F Kianian; Jeffrey M Leonard
Journal:  PLoS One       Date:  2012-11-07       Impact factor: 3.240

7.  Construction of whole genome radiation hybrid panels and map of chromosome 5A of wheat using asymmetric somatic hybridization.

Authors:  Chuanen Zhou; Wei Dong; Lu Han; Jiajie Wei; Li Jia; Yang Tan; Daying Zhi; Zeng-Yu Wang; Guangmin Xia
Journal:  PLoS One       Date:  2012-07-16       Impact factor: 3.240
  7 in total

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