Literature DB >> 10319858

A radiation hybrid map of the rat genome containing 5,255 markers.

T K Watanabe1, M T Bihoreau, L C McCarthy, S L Kiguwa, H Hishigaki, A Tsuji, J Browne, Y Yamasaki, A Mizoguchi-Miyakita, K Oga, T Ono, S Okuno, N Kanemoto, E Takahashi, K Tomita, H Hayashi, M Adachi, C Webber, M Davis, S Kiel, C Knights, A Smith, R Critcher, J Miller, T Thangarajah, P J Day, J R Hudson, Y Irie, T Takagi, Y Nakamura, P N Goodfellow, G M Lathrop, A Tanigami, M R James.   

Abstract

A whole-genome radiation hybrid (RH) panel was used to construct a high-resolution map of the rat genome based on microsatellite and gene markers. These include 3,019 new microsatellite markers described here for the first time and 1,714 microsatellite markers with known genetic locations, allowing comparison and integration of maps from different sources. A robust RH framework map containing 1,030 positions ordered with odds of at least 1,000:1 has been defined as a tool for mapping these markers, and for future RH mapping in the rat. More than 500 genes which have been mapped in mouse and/or human were localized with respect to the rat RH framework, allowing the construction of detailed rat-mouse and rat-human comparative maps and illustrating the power of the RH approach for comparative mapping.

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Year:  1999        PMID: 10319858     DOI: 10.1038/8737

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  42 in total

1.  Interspersed repetitive sequence (IRS)-PCR for typing of whole genome radiation hybrid panels.

Authors:  H Himmelbauer; L C Schalkwyk; H Lehrach
Journal:  Nucleic Acids Res       Date:  2000-01-15       Impact factor: 16.971

2.  Genome-scale evolution: reconstructing gene orders in the ancestral species.

Authors:  Guillaume Bourque; Pavel A Pevzner
Journal:  Genome Res       Date:  2002-01       Impact factor: 9.043

3.  Quantitative trait locus mapping in laboratory mice derived from a replicated selection experiment for open-field activity.

Authors:  M G Turri; N D Henderson; J C DeFries; J Flint
Journal:  Genetics       Date:  2001-07       Impact factor: 4.562

4.  A question of size: the eukaryotic proteome and the problems in defining it.

Authors:  Paul M Harrison; Anuj Kumar; Ning Lang; Michael Snyder; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2002-03-01       Impact factor: 16.971

5.  Manual 768 or 384 well microplate gel 'dry' electrophoresis for PCR checking and SNP genotyping.

Authors:  Tom R Gaunt; Lesley J Hinks; Hamid Rassoulian; Ian N M Day
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

Review 6.  Genetic rat models of hypertension: relationship to human hypertension.

Authors:  M Stoll; H J Jacob
Journal:  Curr Hypertens Rep       Date:  2001-04       Impact factor: 5.369

7.  High-resolution radiation hybrid map of wheat chromosome 1D.

Authors:  Venu Kalavacharla; Khwaja Hossain; Yong Gu; Oscar Riera-Lizarazu; M Isabel Vales; Suresh Bhamidimarri; Jose L Gonzalez-Hernandez; Shivcharan S Maan; Shahryar F Kianian
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

8.  Exploiting plant somatic radiation hybrids for physical mapping of expressed sequence tags.

Authors:  J Wardrop; J Fuller; W Powell; G C Machray
Journal:  Theor Appl Genet       Date:  2003-09-25       Impact factor: 5.699

9.  Marker-assisted congenic screening (MACS): a database tool for the efficient production and characterization of congenic lines.

Authors:  Stephan C Collins; Robert H Wallis; Karin Wallace; Marie Thérèse Bihoreau; Dominique Gauguier
Journal:  Mamm Genome       Date:  2003-05       Impact factor: 2.957

10.  Application of AFLP technology to radiation hybrid mapping.

Authors:  C Gorni; J L Williams; H C M Heuven; R Negrini; A Valentini; M J T van Eijk; D Waddington; M Zevenbergen; P Ajmone Marsan; J D Peleman
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

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