Literature DB >> 14512735

Reconstruction of the three-dimensional NMR spectrum of a protein from a set of plane projections.

Eriks Kupce1, Ray Freeman.   

Abstract

Three-dimensional protein NMR spectra can be obtained significantly faster than by traditional methods by a projection-reconstruction procedure related to X-ray tomography. First, two orthogonal projections are acquired in quick two-dimensional experiments with the evolution parameters t(1) or t(2) set to zero. These projections define a three-dimensional lattice; all cross-peaks must lie on this lattice but not all lattice points are occupied. A third experiment with t(1) and t(2) incremented simultaneously and in a fixed ratio, generates a projection onto a tilted plane and thus establishes the positions of all the cross-peaks unambiguously. This projection-reconstruction technique has been tested on the 500 MHz three-dimensional HNCO spectrum of ubiquitin.

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Year:  2003        PMID: 14512735     DOI: 10.1023/a:1025819517642

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  12 in total

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3.  Reduced-dimensionality NMR spectroscopy for high-throughput protein resonance assignment.

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4.  Fast multi-dimensional NMR of proteins.

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5.  Progress on the two-dimensional filter diagonalization method. An efficient doubling scheme for two-dimensional constant-time NMR.

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6.  Multiple quadrature detection in reduced dimensionality experiments.

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Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

7.  GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.

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8.  Fast multi-dimensional Hadamard spectroscopy.

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9.  Principles and features of single-scan two-dimensional NMR spectroscopy.

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Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

10.  Computerized transverse axial scanning (tomography). 1. Description of system.

Authors:  G N Hounsfield
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  19 in total

Review 1.  Radial sampling for fast NMR: Concepts and practices over three decades.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-07-30       Impact factor: 9.795

2.  (3,2)D GFT-NMR experiments for fast data collection from proteins.

Authors:  Youlin Xia; Guang Zhu; Sudha Veeraraghavan; Xiaolian Gao
Journal:  J Biomol NMR       Date:  2004-08       Impact factor: 2.835

3.  Fast reconstruction of four-dimensional NMR spectra from plane projections.

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4.  Iterative algorithm of discrete Fourier transform for processing randomly sampled NMR data sets.

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5.  Addressing the overlap problem in the quantitative analysis of two dimensional NMR spectra: application to (15)N relaxation measurements.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Eriks Kupce; Lewis E Kay
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6.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

7.  PR-CALC: a program for the reconstruction of NMR spectra from projections.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2006-03       Impact factor: 2.835

8.  Sampling of the NMR time domain along concentric rings.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

9.  Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers.

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Journal:  J Magn Reson       Date:  2013-08-30       Impact factor: 2.229

10.  High resolution 4-D spectroscopy with sparse concentric shell sampling and FFT-CLEAN.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Biomol NMR       Date:  2008-10-14       Impact factor: 2.835

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