Literature DB >> 1408800

The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates.

C S Tzeng1, C F Hui, S C Shen, P C Huang.   

Abstract

The complete mitochondrial (mt) genome of Crossostoma lacustre, a freshwater loach from mountain stream of Taiwan, has been cloned and sequenced. This fish mt genome, consisting of 16558 base-pairs, encodes genes for 13 proteins, two rRNAs, and 22 tRNAs, in addition to a regulatory sequence for replication and transcription (D-loop), is similar to those of the other vertebrates in both the order and orientation of these genes. The protein-coding and ribosomal RNA genes are highly homologous both in size and composition, to their counterparts in mammals, birds, amphibians, and invertebrates, and using essentially the same set of codons, including both the initiation and termination signals, and the tRNAs. Differences do exist, however, in the lengths and sequences of the D-loop regions, and in space between genes, which account for the variations in total lengths of the genomes. Our observations provide evidence for the first time for the conservation of genetic information in the fish mitochondrial genome, especially among the vertebrates.

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Year:  1992        PMID: 1408800      PMCID: PMC334242          DOI: 10.1093/nar/20.18.4853

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  33 in total

1.  Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards.

Authors:  C Moritz; W M Brown
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

2.  Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.

Authors:  D R Wolstenholme; J L Macfarlane; R Okimoto; D O Clary; J A Wahleithner
Journal:  Proc Natl Acad Sci U S A       Date:  1987-03       Impact factor: 11.205

Review 3.  Animal mitochondrial DNA: an extreme example of genetic economy.

Authors:  G Attardi
Journal:  Int Rev Cytol       Date:  1985

4.  Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.

Authors:  S Henikoff
Journal:  Gene       Date:  1984-06       Impact factor: 3.688

5.  A comprehensive set of sequence analysis programs for the VAX.

Authors:  J Devereux; P Haeberli; O Smithies
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

6.  Supercoil sequencing: a fast and simple method for sequencing plasmid DNA.

Authors:  E Y Chen; P H Seeburg
Journal:  DNA       Date:  1985-04

7.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

8.  Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome.

Authors:  S Anderson; M H de Bruijn; A R Coulson; I C Eperon; F Sanger; I G Young
Journal:  J Mol Biol       Date:  1982-04-25       Impact factor: 5.469

9.  The complete nucleotide sequence of the Xenopus laevis mitochondrial genome.

Authors:  B A Roe; D P Ma; R K Wilson; J F Wong
Journal:  J Biol Chem       Date:  1985-08-15       Impact factor: 5.157

10.  Cloning, physical mapping and genome organization of mitochondrial DNA from Cyprinus carpio oocytes.

Authors:  A Araya; R Amthauer; G Leon; M Krauskopf
Journal:  Mol Gen Genet       Date:  1984
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  51 in total

1.  Mitochondrial evidence on the phylogenetic position of caecilians (Amphibia: Gymnophiona).

Authors:  R Zardoya; A Meyer
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences.

Authors:  K Saitoh; T Sado; R L Mayden; N Hanzawa; K Nakamura; M Nishida; M Miya
Journal:  J Mol Evol       Date:  2006-11-02       Impact factor: 2.395

3.  The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria.

Authors:  J Castresana; G Feldmaier-Fuchs; S Yokobori; N Satoh; S Pääbo
Journal:  Genetics       Date:  1998-11       Impact factor: 4.562

4.  Model of amino acid substitution in proteins encoded by mitochondrial DNA.

Authors:  J Adachi; M Hasegawa
Journal:  J Mol Evol       Date:  1996-04       Impact factor: 2.395

5.  The complete mitochondrial DNA sequence of the crustacean Artemia franciscana.

Authors:  J Ramón Valverde; B Batuecas; C Moratilla; R Marco; R Garesse
Journal:  J Mol Evol       Date:  1994-10       Impact factor: 2.395

6.  Sequence of the mitochondrial tRNA(Thr) and tRNA(Pro) genes from European seabass, Dicentrarchus labrax.

Authors:  F Cecconi; F Venanzetti; P Mariottini
Journal:  Nucleic Acids Res       Date:  1993-05-11       Impact factor: 16.971

7.  The complete nucleotide sequence of the mitochondrial DNA of the dogfish, Scyliorhinus canicula.

Authors:  C Delarbre; N Spruyt; C Delmarre; C Gallut; V Barriel; P Janvier; V Laudet; G Gachelin
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

8.  Mitochondrial DNA of the sea anemone, Metridium senile (Cnidaria): prokaryote-like genes for tRNA(f-Met) and small-subunit ribosomal RNA, and standard genetic code specificities for AGR and ATA codons.

Authors:  G A Pont-Kingdon; C T Beagley; R Okimoto; D R Wolstenholme
Journal:  J Mol Evol       Date:  1994-10       Impact factor: 2.395

9.  Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates.

Authors:  N Spruyt; C Delarbre; G Gachelin; V Laudet
Journal:  Nucleic Acids Res       Date:  1998-07-01       Impact factor: 16.971

10.  Origin of Chinese goldfish and sequential loss of genetic diversity accompanies new breeds.

Authors:  Shu-Yan Wang; Jing Luo; Robert W Murphy; Shi-Fang Wu; Chun-Ling Zhu; Yun Gao; Ya-Ping Zhang
Journal:  PLoS One       Date:  2013-03-19       Impact factor: 3.240

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