Literature DB >> 3469671

Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.

D R Wolstenholme, J L Macfarlane, R Okimoto, D O Clary, J A Wahleithner.   

Abstract

The complete nucleotide sequence of the mitochondrial DNA (mtDNA) molecule of the parasitic nematode worm Ascaris suum has been determined. This molecule lacks genes for tRNAs of the standard form. Instead, 21 sequences are found that can be folded into structures that resemble tRNAs in which the T psi C arm and variable loop are missing and replaced with a single loop of between 4 and 12 nucleotides. Considerations of various properties of these sequences, including the number, predicted anticodons, conserved nucleotides, direction of transcription, base composition, and relative gene arrangements are consistent with the interpretation that they are genes for a different sort of tRNA. Transfer RNA genes with a similar potential secondary structure are found in mtDNA of the free-living nematode Caenorhabditis elegans, suggesting that this unusual form of tRNA is used by all nematode mitochondria.

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Year:  1987        PMID: 3469671      PMCID: PMC304420          DOI: 10.1073/pnas.84.5.1324

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  A different genetic code in human mitochondria.

Authors:  B G Barrell; A T Bankier; J Drouin
Journal:  Nature       Date:  1979-11-08       Impact factor: 49.962

2.  Five TGA "stop" codons occur within the translated sequence of the yeast mitochondrial gene for cytochrome c oxidase subunit II.

Authors:  T D Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1979-12       Impact factor: 11.205

3.  The DNA of Caenorhabditis elegans.

Authors:  J E Sulston; S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

4.  Structure, function, and evolution of transfer RNAs (with appendix giving complete sequences of 178 tRNAs).

Authors:  R P Singhal; P A Fallis
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1979

5.  Drosophila melanogaster mitochondrial DNA, a novel organization and genetic code.

Authors:  M H de Bruijn
Journal:  Nature       Date:  1983 Jul 21-27       Impact factor: 49.962

6.  The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code.

Authors:  D O Clary; D R Wolstenholme
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

7.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

8.  The genetics of Caenorhabditis elegans.

Authors:  S Brenner
Journal:  Genetics       Date:  1974-05       Impact factor: 4.562

9.  A model for the tertiary structure of mammalian mitochondrial transfer RNAs lacking the entire 'dihydrouridine' loop and stem.

Authors:  M H de Bruijn; A Klug
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

10.  A partial map of the circular mitochondrial genome of Drosophila melanogaster. Location of EcoRI-sensitive sites and the adenine-thymine-rich region.

Authors:  D R Wolstenholme; C M Fauron
Journal:  J Cell Biol       Date:  1976-11       Impact factor: 10.539

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  106 in total

1.  Variation in salmonid mitochondrial DNA: evolutionary constraints and mechanisms of substitution.

Authors:  W K Thomas; A T Beckenbach
Journal:  J Mol Evol       Date:  1989-09       Impact factor: 2.395

2.  Evidence for the frequent use of TTG as the translation initiation codon of mitochondrial protein genes in the nematodes, Ascaris suum and Caenorhabditis elegans.

Authors:  R Okimoto; J L Macfarlane; D R Wolstenholme
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

3.  The complete nucleotide sequence of the Crossostoma lacustre mitochondrial genome: conservation and variations among vertebrates.

Authors:  C S Tzeng; C F Hui; S C Shen; P C Huang
Journal:  Nucleic Acids Res       Date:  1992-09-25       Impact factor: 16.971

4.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; N Dank; S Nock; A Schön
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

5.  Phylogenetic relationships and altered genome structures among Tetrahymena mitochondrial DNAs.

Authors:  G B Morin; T R Cech
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

Review 6.  Recent evidence for evolution of the genetic code.

Authors:  S Osawa; T H Jukes; K Watanabe; A Muto
Journal:  Microbiol Rev       Date:  1992-03

7.  The complete mitochondrial genome of the brown leg mite, Aleuroglyphus ovatus (Acari: Sarcoptiformes): evaluation of largest non-coding region and unique tRNAs.

Authors:  En-Tao Sun; Chao-Pin Li; Liu-Wang Nie; Yu-Xin Jiang
Journal:  Exp Appl Acarol       Date:  2014-04-29       Impact factor: 2.132

8.  The Dictyostelium discoideum mitochondrial genome: a primordial system using the universal code and encoding hydrophilic proteins atypical of metazoan mitochondrial DNA.

Authors:  R A Cole; K L Williams
Journal:  J Mol Evol       Date:  1994-12       Impact factor: 2.395

9.  Mitochondrial DNA of the sea anemone, Metridium senile (Cnidaria): prokaryote-like genes for tRNA(f-Met) and small-subunit ribosomal RNA, and standard genetic code specificities for AGR and ATA codons.

Authors:  G A Pont-Kingdon; C T Beagley; R Okimoto; D R Wolstenholme
Journal:  J Mol Evol       Date:  1994-10       Impact factor: 2.395

10.  A novel cloverleaf structure found in mammalian mitochondrial tRNA(Ser) (UCN).

Authors:  T Yokogawa; Y Watanabe; Y Kumazawa; T Ueda; I Hirao; K Miura; K Watanabe
Journal:  Nucleic Acids Res       Date:  1991-11-25       Impact factor: 16.971

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