Literature DB >> 9628930

Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates.

N Spruyt1, C Delarbre, G Gachelin, V Laudet.   

Abstract

The complete nucleotide sequence of the mitochondrial DNA of the amphioxus Branchiostoma lanceolatum has been determined. This mitochondrial genome is small (15 076 bp) because of the short size of the two rRNA genes and the tRNA genes. In addition, this genome contains a very short non-coding region (57 bp) with no sequence reminiscent of a control region. The organisation of the coding genes, as well as of the two rRNA genes, is identical to that of the sea lamprey. Some differences in the repartition of the tRNA genes occur when compared to the lamprey. The mitochondrial codon usage of the amphioxus is reminiscent of that of urochordates since the AGA codon is read as a glycine and not as a stop codon as in vertebrates. Moreover, the base composition at the wobble positions of the codon is strongly biased toward guanine. Altogether, these data clearly emphasise the close relationships between amphioxus and vertebrates, and reinforce the notion that prochordates may be viewed as the brother group of vertebrates.

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Year:  1998        PMID: 9628930      PMCID: PMC147690          DOI: 10.1093/nar/26.13.3279

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

1.  Rearrangements of mitochondrial transfer RNA genes in marsupials.

Authors:  S Pääbo; W K Thomas; K M Whitfield; Y Kumazawa; A C Wilson
Journal:  J Mol Evol       Date:  1991-11       Impact factor: 2.395

2.  The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of Paracentrotus lividus.

Authors:  P Cantatore; M Roberti; G Rainaldi; M N Gadaleta; C Saccone
Journal:  J Biol Chem       Date:  1989-07-05       Impact factor: 5.157

3.  Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates.

Authors:  P Desjardins; R Morais
Journal:  J Mol Biol       Date:  1990-04-20       Impact factor: 5.469

4.  Conserved tRNA gene cluster in starfish mitochondrial DNA.

Authors:  H T Jacobs; S Asakawa; T Araki; K Miura; M J Smith; K Watanabe
Journal:  Curr Genet       Date:  1989-03       Impact factor: 3.886

5.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

6.  The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code.

Authors:  D O Clary; D R Wolstenholme
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

7.  The mitochondrial DNA molecule of the hagfish (Myxine glutinosa) and vertebrate phylogeny.

Authors:  A S Rasmussen; A Janke; U Arnason
Journal:  J Mol Evol       Date:  1998-04       Impact factor: 2.395

8.  The complete nucleotide sequence of the Xenopus laevis mitochondrial genome.

Authors:  B A Roe; D P Ma; R K Wilson; J F Wong
Journal:  J Biol Chem       Date:  1985-08-15       Impact factor: 5.157

9.  Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes.

Authors:  P Cantatore; M N Gadaleta; M Roberti; C Saccone; A C Wilson
Journal:  Nature       Date:  1987 Oct 29-Nov 4       Impact factor: 49.962

10.  Nucleotide sequence and gene organization of sea urchin mitochondrial DNA.

Authors:  H T Jacobs; D J Elliott; V B Math; A Farquharson
Journal:  J Mol Biol       Date:  1988-07-20       Impact factor: 5.469

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  15 in total

1.  5S ribosomal RNA database Y2K.

Authors:  M Szymanski; M Z Barciszewska; J Barciszewski; V A Erdmann
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Mitochondrial evidence on the phylogenetic position of caecilians (Amphibia: Gymnophiona).

Authors:  R Zardoya; A Meyer
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

3.  Mitochondrial genome of Ciona savignyi (Urochordata, Ascidiacea, Enterogona): comparison of gene arrangement and tRNA genes with Halocynthia roretzi mitochondrial genome.

Authors:  Shin-ichi Yokobori; Yukari Watanabe; Tairo Oshima
Journal:  J Mol Evol       Date:  2003-11       Impact factor: 2.395

4.  Evidence that the large noncoding sequence is the main control region of maternally and paternally transmitted mitochondrial genomes of the marine mussel (Mytilus spp.).

Authors:  Liqin Cao; Ellen Kenchington; Eleftherios Zouros; George C Rodakis
Journal:  Genetics       Date:  2004-06       Impact factor: 4.562

5.  A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs.

Authors:  Steven E Massey; James R Garey
Journal:  J Mol Evol       Date:  2007-03-27       Impact factor: 2.395

6.  Analysis of the complete mitochondrial DNA sequence of the brachiopod terebratulina retusa places Brachiopoda within the protostomes.

Authors:  A Stechmann; M Schlegel
Journal:  Proc Biol Sci       Date:  1999-10-22       Impact factor: 5.349

7.  Evolution of the mitochondrial genome in cephalochordata as inferred from complete nucleotide sequences from two epigonichthys species.

Authors:  Masahiro Nohara; Mutsumi Nishida; Masaki Miya; Teruaki Nishikawa
Journal:  J Mol Evol       Date:  2005-04       Impact factor: 2.395

8.  Euteleost fish genomes are characterized by expansion of gene families.

Authors:  M Robinson-Rechavi; O Marchand; H Escriva; P L Bardet; D Zelus; S Hughes; V Laudet
Journal:  Genome Res       Date:  2001-05       Impact factor: 9.043

9.  The mechanisms of codon reassignments in mitochondrial genetic codes.

Authors:  Supratim Sengupta; Xiaoguang Yang; Paul G Higgs
Journal:  J Mol Evol       Date:  2007-05-29       Impact factor: 2.395

10.  Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangement and the presence of an atp8 and an extra trnM gene in ascidians.

Authors:  Carmela Gissi; Fabio Iannelli; Graziano Pesole
Journal:  J Mol Evol       Date:  2004-04       Impact factor: 2.395

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