Literature DB >> 13130131

Protein synthesis by single ribosomes.

Francesco Vanzi1, Serguei Vladimirov, Charlotte R Knudsen, Yale E Goldman, Barry S Cooperman.   

Abstract

The ribosome is universally responsible for synthesizing proteins by translating the genetic code transcribed in mRNA into an amino acid sequence. Ribosomes use cellular accessory proteins, soluble transfer RNAs, and metabolic energy to accomplish the initiation, elongation, and termination of peptide synthesis. In translocating processively along the mRNA template during the elongation cycle, ribosomes act as supramolecular motors. Here we demonstrate that ribosomes adsorbed on a surface, as for mechanical or spectroscopic studies, are capable of polypeptide synthesis and that tethered particle analysis of fluorescent beads connected to ribosomes via polyuridylic acid can be used to estimate the rate of polyphenylalanine synthesis by individual ribosomes. This work opens the way for application of biophysical techniques, originally developed for the classical motor proteins, to the understanding of protein biosynthesis.

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Year:  2003        PMID: 13130131      PMCID: PMC1370481          DOI: 10.1261/rna.5800303

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  31 in total

1.  Crystal structure of the ribosome at 5.5 A resolution.

Authors:  M M Yusupov; G Z Yusupova; A Baucom; K Lieberman; T N Earnest; J H Cate; H F Noller
Journal:  Science       Date:  2001-03-29       Impact factor: 47.728

2.  Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation.

Authors:  H Stark; M V Rodnina; H J Wieden; M van Heel; W Wintermeyer
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

Review 3.  Real time imaging of rotating molecular machines.

Authors:  K Kinosita
Journal:  FASEB J       Date:  1999-12       Impact factor: 5.191

Review 4.  Single-molecule biomechanics with optical methods.

Authors:  A D Mehta; M Rief; J A Spudich; D A Smith; R M Simmons
Journal:  Science       Date:  1999-03-12       Impact factor: 47.728

Review 5.  Twisting and stretching single DNA molecules.

Authors:  T Strick; J Allemand; V Croquette; D Bensimon
Journal:  Prog Biophys Mol Biol       Date:  2000       Impact factor: 3.667

6.  The complete atomic structure of the large ribosomal subunit at 2.4 A resolution.

Authors:  N Ban; P Nissen; J Hansen; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

Review 7.  GTPases mechanisms and functions of translation factors on the ribosome.

Authors:  M V Rodnina; H Stark; A Savelsbergh; H J Wieden; D Mohr; N B Matassova; F Peske; T Daviter; C O Gualerzi; W Wintermeyer
Journal:  Biol Chem       Date:  2000 May-Jun       Impact factor: 3.915

Review 8.  Single molecule nanobioscience.

Authors:  A Ishijima; T Yanagida
Journal:  Trends Biochem Sci       Date:  2001-07       Impact factor: 13.807

Review 9.  Cryo-electron microscopy as an investigative tool: the ribosome as an example.

Authors:  J Frank
Journal:  Bioessays       Date:  2001-08       Impact factor: 4.345

10.  Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.

Authors:  G J Wuite; S B Smith; M Young; D Keller; C Bustamante
Journal:  Nature       Date:  2000-03-02       Impact factor: 49.962

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  26 in total

1.  Three-dimensional characterization of tethered microspheres by total internal reflection fluorescence microscopy.

Authors:  Seth Blumberg; Arivalagan Gajraj; Matthew W Pennington; Jens-Christian Meiners
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

2.  Volume-exclusion effects in tethered-particle experiments: bead size matters.

Authors:  Darren E Segall; Philip C Nelson; Rob Phillips
Journal:  Phys Rev Lett       Date:  2006-03-03       Impact factor: 9.161

3.  DNA looping kinetics analyzed using diffusive hidden Markov model.

Authors:  John F Beausang; Chiara Zurla; Carlo Manzo; David Dunlap; Laura Finzi; Philip C Nelson
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

4.  Analysis of kinetics in noisy systems: application to single molecule tethered particle motion.

Authors:  F Vanzi; L Sacconi; F S Pavone
Journal:  Biophys J       Date:  2007-04-13       Impact factor: 4.033

5.  The Effect of RNA Secondary Structure on the Self-Assembly of Viral Capsids.

Authors:  Christian Beren; Lisa L Dreesens; Katherine N Liu; Charles M Knobler; William M Gelbart
Journal:  Biophys J       Date:  2017-07-12       Impact factor: 4.033

6.  Breaking the barriers of translation.

Authors:  Scott C Blanchard
Journal:  Nat Chem Biol       Date:  2008-05       Impact factor: 15.040

7.  A simple wooden ribosome model: helping students understand transpeptidation.

Authors:  Donald A Klein
Journal:  J Microbiol Biol Educ       Date:  2010-12-20

8.  Multiple LacI-mediated loops revealed by Bayesian statistics and tethered particle motion.

Authors:  Stephanie Johnson; Jan-Willem van de Meent; Rob Phillips; Chris H Wiggins; Martin Lindén
Journal:  Nucleic Acids Res       Date:  2014-08-12       Impact factor: 16.971

9.  Tethered Particle Motion: An Easy Technique for Probing DNA Topology and Interactions with Transcription Factors.

Authors:  Daniel T Kovari; Yan Yan; Laura Finzi; David Dunlap
Journal:  Methods Mol Biol       Date:  2018

10.  Conjugation with polyamines enhances the antibacterial and anticancer activity of chloramphenicol.

Authors:  Ourania N Kostopoulou; Ekaterini C Kouvela; George E Magoulas; Thomas Garnelis; Ioannis Panagoulias; Maria Rodi; Georgios Papadopoulos; Athanasia Mouzaki; George P Dinos; Dionissios Papaioannou; Dimitrios L Kalpaxis
Journal:  Nucleic Acids Res       Date:  2014-06-17       Impact factor: 16.971

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