Literature DB >> 10937868

GTPases mechanisms and functions of translation factors on the ribosome.

M V Rodnina1, H Stark, A Savelsbergh, H J Wieden, D Mohr, N B Matassova, F Peske, T Daviter, C O Gualerzi, W Wintermeyer.   

Abstract

The elongation factors (EF) Tu and G and initiation factor 2 (IF2) from bacteria are multidomain GTPases with essential functions in the elongation and initiation phases of translation. They bind to the same site on the ribosome where their low intrinsic GTPase activities are strongly stimulated. The factors differ fundamentally from each other, and from the majority of GTPases, in the mechanisms of GTPase control, the timing of Pi release, and the functional role of GTP hydrolysis. EF-Tu x GTP forms a ternary complex with aminoacyl-tRNA, which binds to the ribosome. Only when a matching codon is recognized, the GTPase of EF-Tu is stimulated, rapid GTP hydrolysis and Pi release take place, EF-Tu rearranges to the GDP form, and aminoacyl-tRNA is released into the peptidyltransferase center. In contrast, EF-G hydrolyzes GTP immediately upon binding to the ribosome, stimulated by ribosomal protein L7/12. Subsequent translocation is driven by the slow dissociation of Pi, suggesting a mechano-chemical function of EF-G. Accordingly, different conformations of EF-G on the ribosome are revealed by cryo-electron microscopy. GTP hydrolysis by IF2 is triggered upon formation of the 70S initiation complex, and the dissociation of Pi and/or IF2 follows a rearrangement of the ribosome into the elongation-competent state.

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Year:  2000        PMID: 10937868     DOI: 10.1515/BC.2000.050

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  32 in total

1.  Effects of base change mutations within an Escherichia coli ribosomal RNA leader region on rRNA maturation and ribosome formation.

Authors:  J Schäferkordt; R Wagner
Journal:  Nucleic Acids Res       Date:  2001-08-15       Impact factor: 16.971

2.  Protein synthesis by single ribosomes.

Authors:  Francesco Vanzi; Serguei Vladimirov; Charlotte R Knudsen; Yale E Goldman; Barry S Cooperman
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

3.  tRNA dynamics on the ribosome during translation.

Authors:  Scott C Blanchard; Harold D Kim; Ruben L Gonzalez; Joseph D Puglisi; Steven Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

4.  Studies of the interaction of Escherichia coli YjeQ with the ribosome in vitro.

Authors:  Denis M Daigle; Eric D Brown
Journal:  J Bacteriol       Date:  2004-03       Impact factor: 3.490

5.  A novel GTPase activated by the small subunit of ribosome.

Authors:  Hyouta Himeno; Kyoko Hanawa-Suetsugu; Takatsugu Kimura; Kuniaki Takagi; Wakana Sugiyama; Shinobu Shirata; Tomoyuki Mikami; Fujiko Odagiri; Yukiko Osanai; Daisuke Watanabe; Simon Goto; Liliya Kalachnyuk; Chisato Ushida; Akira Muto
Journal:  Nucleic Acids Res       Date:  2004-10-05       Impact factor: 16.971

6.  eIF5B employs a novel domain release mechanism to catalyze ribosomal subunit joining.

Authors:  Bernhard Kuhle; Ralf Ficner
Journal:  EMBO J       Date:  2014-03-31       Impact factor: 11.598

Review 7.  Initiation of protein synthesis in bacteria.

Authors:  Brian Søgaard Laursen; Hans Peter Sørensen; Kim Kusk Mortensen; Hans Uffe Sperling-Petersen
Journal:  Microbiol Mol Biol Rev       Date:  2005-03       Impact factor: 11.056

8.  Thiostrepton inhibition of tRNA delivery to the ribosome.

Authors:  Ruben L Gonzalez; Steven Chu; Joseph D Puglisi
Journal:  RNA       Date:  2007-10-19       Impact factor: 4.942

9.  Structural relationships among the ribosomal stalk proteins from the three domains of life.

Authors:  Przemysław Grela; Pau Bernadó; Dmitri Svergun; Jan Kwiatowski; Dariusz Abramczyk; Nikodem Grankowski; Marek Tchórzewski
Journal:  J Mol Evol       Date:  2008-07-09       Impact factor: 2.395

10.  Allosteric control of the ribosome by small-molecule antibiotics.

Authors:  Leyi Wang; Arto Pulk; Michael R Wasserman; Michael B Feldman; Roger B Altman; Jamie H Doudna Cate; Scott C Blanchard
Journal:  Nat Struct Mol Biol       Date:  2012-08-19       Impact factor: 15.369

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