Literature DB >> 10676812

Large-scale movement of elongation factor G and extensive conformational change of the ribosome during translocation.

H Stark1, M V Rodnina, H J Wieden, M van Heel, W Wintermeyer.   

Abstract

Elongation factor (EF) G promotes tRNA translocation on the ribosome. We present three-dimensional reconstructions, obtained by cryo-electron microscopy, of EF-G-ribosome complexes before and after translocation. In the pretranslocation state, domain 1 of EF-G interacts with the L7/12 stalk on the 50S subunit, while domain 4 contacts the shoulder of the 30S subunit in the region where protein S4 is located. During translocation, EF-G experiences an extensive reorientation, such that, after translocation, domain 4 reaches into the decoding center. The factor assumes different conformations before and after translocation. The structure of the ribosome is changed substantially in the pretranslocation state, in particular at the head-to-body junction in the 30S subunit, suggesting a possible mechanism of translocation.

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Year:  2000        PMID: 10676812     DOI: 10.1016/s0092-8674(00)80666-2

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  84 in total

1.  Arrangement of the central pseudoknot region of 16S rRNA in the 30S ribosomal subunit determined by site-directed 4-thiouridine crosslinking.

Authors:  D I Juzumiene; P Wollenzien
Journal:  RNA       Date:  2001-01       Impact factor: 4.942

2.  Ribosomal dynamics inferred from variations in experimental measurements.

Authors:  Irene S Gabashvili; Michelle Whirl-Carrillo; Michael Bada; D Rey Banatao; Russ B Altman
Journal:  RNA       Date:  2003-11       Impact factor: 4.942

3.  Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process.

Authors:  Mikel Valle; Jayati Sengupta; Neil K Swami; Robert A Grassucci; Nils Burkhardt; Knud H Nierhaus; Rajendra K Agrawal; Joachim Frank
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

4.  A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy.

Authors:  Xiongwu Wu; Jacqueline L S Milne; Mario J Borgnia; Alexey V Rostapshov; Sriram Subramaniam; Bernard R Brooks
Journal:  J Struct Biol       Date:  2003-01       Impact factor: 2.867

Review 5.  After the ribosome structure: how does translocation work?

Authors:  Simpson Joseph
Journal:  RNA       Date:  2003-02       Impact factor: 4.942

6.  Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy.

Authors:  Florence Tama; Mikel Valle; Joachim Frank; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205

7.  Protein synthesis by single ribosomes.

Authors:  Francesco Vanzi; Serguei Vladimirov; Charlotte R Knudsen; Yale E Goldman; Barry S Cooperman
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

8.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

9.  Structure of the ribosome with elongation factor G trapped in the pretranslocation state.

Authors:  Axel F Brilot; Andrei A Korostelev; Dmitri N Ermolenko; Nikolaus Grigorieff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-09       Impact factor: 11.205

Review 10.  Ribosomal translocation: one step closer to the molecular mechanism.

Authors:  Shinichiro Shoji; Sarah E Walker; Kurt Fredrick
Journal:  ACS Chem Biol       Date:  2009-02-20       Impact factor: 5.100

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