Literature DB >> 9654491

A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information.

G M Clore1, A M Gronenborn, A Bax.   

Abstract

It has recently been shown that the degree of alignment of macromolecules in an aqueous dilute liquid crystalline medium of bicelles is sufficient to permit accurate values of residual 15N-1H, 13C-1H, and 13Calpha-C' dipolar couplings to be obtained on a routine basis, thereby providing potentially unique long-range structural information. To make use of this information in macromolecular structure determination, the magnitude of the axial and rhombic components of the molecular alignment tensor must be determined. This can be achieved by taking advantage of the fact that different, fixed-distance internuclear vector types are differently distributed relative to the alignment tensor. A histogram of the ensemble of normalized residual dipolar couplings for several such vector types approximates a powder pattern from which the magnitude of the axial and rhombic components are readily extracted in the absence of any prior structural information. The applicability of this method is demonstrated using synthetic data derived from four proteins representative of different sizes, topologies, and secondary structures, and experimental data measured on the small protein ubiquitin. Copyright 1998 Academic Press.

Mesh:

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Year:  1998        PMID: 9654491     DOI: 10.1006/jmre.1998.1419

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  128 in total

1.  A new approach for applying residual dipolar couplings as restraints in structure elucidation.

Authors:  J Meiler; N Blomberg; M Nilges; C Griesinger
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

2.  Transverse relaxation optimised spin-state selective NMR experiments for measurement of residual dipolar couplings.

Authors:  P Permi; A Annila
Journal:  J Biomol NMR       Date:  2000-03       Impact factor: 2.835

3.  Refinement of the structure of protein-RNA complexes by residual dipolar coupling analysis.

Authors:  P Bayer; L Varani; G Varani
Journal:  J Biomol NMR       Date:  1999-06       Impact factor: 2.835

4.  A method for incorporating dipolar couplings into structure calculations in cases of (near) axial symmetry of alignment.

Authors:  G A Mueller; W Y Choy; N R Skrynnikov; L E Kay
Journal:  J Biomol NMR       Date:  2000-11       Impact factor: 2.835

5.  The use of dipolar couplings for determining the solution structure of rat apo-S100B(betabeta).

Authors:  A C Drohat; N Tjandra; D M Baldisseri; D J Weber
Journal:  Protein Sci       Date:  1999-04       Impact factor: 6.725

6.  Accurate and rapid docking of protein-protein complexes on the basis of intermolecular nuclear overhauser enhancement data and dipolar couplings by rigid body minimization.

Authors:  G M Clore
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-01       Impact factor: 11.205

7.  An easy way to include weak alignment constraints into NMR structure calculations.

Authors:  H J Sass; G Musco; S J Stahl; P T Wingfield; S Grzesiek
Journal:  J Biomol NMR       Date:  2001-11       Impact factor: 2.835

8.  Exact solutions for chemical bond orientations from residual dipolar couplings.

Authors:  William J Wedemeyer; Carol A Rohl; Harold A Scherag
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

9.  Direct structure refinement of high molecular weight proteins against residual dipolar couplings and carbonyl chemical shift changes upon alignment: an application to maltose binding protein.

Authors:  W Y Choy; M Tollinger; G A Mueller; L E Kay
Journal:  J Biomol NMR       Date:  2001-09       Impact factor: 2.835

10.  Application of dipolar coupling data to the refinement of the solution structure of the sarcin-ricin loop RNA.

Authors:  J J Warren; P B Moore
Journal:  J Biomol NMR       Date:  2001-08       Impact factor: 2.835

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