Literature DB >> 12944299

Translational hydration water dynamics drives the protein glass transition.

Alexander L Tournier1, Jiancong Xu, Jeremy C Smith.   

Abstract

Experimental and computer simulation studies have revealed the presence of a glass-like transition in the internal dynamics of hydrated proteins at approximately 200 K involving an increase of the amplitude of anharmonic dynamics. This increase in flexibility has been correlated with the onset of protein activity. Here, we determine the driving force behind the protein transition by performing molecular dynamics simulations of myoglobin surrounded by a shell of water. A dual heat bath method is used with which, in any given simulation, the protein and solvent are held at different temperatures, and sets of simulations are performed varying the temperature of the components. The results show that the protein transition is driven by a dynamical transition in the hydration water that induces increased fluctuations primarily in side chains in the external regions of the protein. The water transition involves activation of translational diffusion and occurs even in simulations where the protein atoms are held fixed.

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Year:  2003        PMID: 12944299      PMCID: PMC1303358          DOI: 10.1016/S0006-3495(03)74614-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  32 in total

Review 1.  How soft is a protein? A protein dynamics force constant measured by neutron scattering.

Authors:  G Zaccai
Journal:  Science       Date:  2000-06-02       Impact factor: 47.728

2.  Role of protein-water hydrogen bond dynamics in the protein dynamical transition.

Authors:  M Tarek; D J Tobias
Journal:  Phys Rev Lett       Date:  2002-03-14       Impact factor: 9.161

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Authors:  A L Lee; A J Wand
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

4.  Effect of the environment on the protein dynamical transition: a neutron scattering study.

Authors:  Alessandro Paciaroni; Stefania Cinelli; Giuseppe Onori
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

5.  Effects of temperature on protein structure and dynamics: X-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320 K.

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Journal:  Biochemistry       Date:  1992-03-10       Impact factor: 3.162

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Journal:  Phys Rev Lett       Date:  1990-08-20       Impact factor: 9.161

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Authors:  S J Hagen; J Hofrichter; W A Eaton
Journal:  Science       Date:  1995-08-18       Impact factor: 47.728

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Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

10.  Evidence for a correlation between the photoinduced electron transfer and dynamic properties of the chromatophore membranes from Rhodospirillum rubrum.

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  46 in total

1.  The influence of solvent composition on global dynamics of human butyrylcholinesterase powders: a neutron-scattering study.

Authors:  F Gabel; M Weik; B P Doctor; A Saxena; D Fournier; L Brochier; F Renault; P Masson; I Silman; G Zaccai
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

Review 2.  Structure, dynamics and reactions of protein hydration water.

Authors:  Jeremy C Smith; Franci Merzel; Ana-Nicoleta Bondar; Alexander Tournier; Stefan Fischer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

Review 3.  The effect of water on protein dynamics.

Authors:  G Zaccai
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

4.  Neutron frequency windows and the protein dynamical transition.

Authors:  Torsten Becker; Jennifer A Hayward; John L Finney; Roy M Daniel; Jeremy C Smith
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

5.  Biomolecular cryocrystallography: structural changes during flash-cooling.

Authors:  Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-29       Impact factor: 11.205

6.  Protein dynamical transition at 110 K.

Authors:  Chae Un Kim; Mark W Tate; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-13       Impact factor: 11.205

7.  Functional domain motions in proteins on the ~1-100 ns timescale: comparison of neutron spin-echo spectroscopy of phosphoglycerate kinase with molecular-dynamics simulation.

Authors:  N Smolin; R Biehl; G R Kneller; D Richter; J C Smith
Journal:  Biophys J       Date:  2012-03-06       Impact factor: 4.033

8.  Dynamics of biological macromolecules: not a simple slaving by hydration water.

Authors:  S Khodadadi; J H Roh; A Kisliuk; E Mamontov; M Tyagi; S A Woodson; R M Briber; A P Sokolov
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

9.  Relaxation kinetics and the glassiness of native proteins: coupling of timescales.

Authors:  Canan Baysal; Ali Rana Atilgan
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

10.  Coupling of protein and hydration-water dynamics in biological membranes.

Authors:  K Wood; M Plazanet; F Gabel; B Kessler; D Oesterhelt; D J Tobias; G Zaccai; M Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-06       Impact factor: 11.205

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