Literature DB >> 12906578

Adherence of packing defects in soluble proteins.

Ariel Fernández1, L Ridgway Scott.   

Abstract

For protein structure to prevail in water, its backbone hydrogen bonds must be shielded from water attack, requiring a cluster of "wrapping" nonpolar groups. Thus, underwrapped regions are adhesive, as exogenous removal of surrounding water becomes thermodynamically favorable. Here we measure the average adhesive force exerted by an underwrapped hydrogen bond on a test hydrophobe and thus define a new interactivity constant.

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Year:  2003        PMID: 12906578     DOI: 10.1103/PhysRevLett.91.018102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  13 in total

1.  The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks.

Authors:  Ariel Fernández; Ridgway Scott; R Stephen Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-20       Impact factor: 11.205

2.  Incomplete protein packing as a selectivity filter in drug design.

Authors:  Ariel Fernández
Journal:  Structure       Date:  2005-12       Impact factor: 5.006

Review 3.  Kinase packing defects as drug targets.

Authors:  Alejandro Crespo; Ariel Fernández
Journal:  Drug Discov Today       Date:  2007-10-30       Impact factor: 7.851

4.  Protein packing defects "heat up" interfacial water.

Authors:  María Belén Sierra; Sebastián R Accordino; J Ariel Rodriguez-Fris; Marcela A Morini; Gustavo A Appignanesi; Ariel Fernández Stigliano
Journal:  Eur Phys J E Soft Matter       Date:  2013-06-25       Impact factor: 1.890

5.  Quantitative fluorescence correlation spectroscopy reveals a 1000-fold increase in lifetime of protein functionality.

Authors:  Dianwen Zhang; Hannes Lans; Wim Vermeulen; Aufried Lenferink; Cees Otto
Journal:  Biophys J       Date:  2008-06-27       Impact factor: 4.033

6.  Role of hydration in collagen recognition by bacterial adhesins.

Authors:  Luigi Vitagliano; Rita Berisio; Alfonso De Simone
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

7.  A unifying motif of intermolecular cooperativity in protein associations.

Authors:  S R Accordino; J A Rodriguez Fris; G A Appignanesi; A Fernández
Journal:  Eur Phys J E Soft Matter       Date:  2012-07-16       Impact factor: 1.890

8.  "Chameleonic" backbone hydrogen bonds in protein binding and as drug targets.

Authors:  C A Menéndez; S R Accordino; D C Gerbino; G A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2015-10-19       Impact factor: 1.890

9.  Studies on electrostatic interactions within model nano-confined aqueous environments of different chemical nature.

Authors:  Joan Manuel Montes de Oca; Cintia A Menéndez; Sebastián R Accordino; David C Malaspina; Gustavo A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2017-09-20       Impact factor: 1.890

10.  Human capacitance to dosage imbalance: coping with inefficient selection.

Authors:  Ariel Fernández; Jianping Chen
Journal:  Genome Res       Date:  2009-10-09       Impact factor: 9.043

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