Literature DB >> 22791307

A unifying motif of intermolecular cooperativity in protein associations.

S R Accordino1, J A Rodriguez Fris, G A Appignanesi, A Fernández.   

Abstract

At the molecular level, most biological processes entail protein associations which in turn rely on a small fraction of interfacial residues called hot spots. Our theoretical analysis shows that hot spots share a unifying molecular attribute: they provide a third-body contribution to intermolecular cooperativity. Such motif, based on the wrapping of interfacial electrostatic interactions, is essential to maintain the integrity of the interface. Thus, our main result is to unravel the molecular nature of the protein association problem by revealing its underlying physics and thus by casting it in simple physical grounds. Such knowledge could then be exploited in rational drug design since the regions here indicated may serve as blueprints to engineer small molecules disruptive of protein-protein interfaces.

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Year:  2012        PMID: 22791307     DOI: 10.1140/epje/i2012-12059-0

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  27 in total

1.  Dissecting protein-protein recognition sites.

Authors:  Pinak Chakrabarti; Joël Janin
Journal:  Proteins       Date:  2002-05-15

2.  Geometrically centered region: a "wet" model of protein binding hot spots not excluding water molecules.

Authors:  Zhenhua Li; Jinyan Li
Journal:  Proteins       Date:  2010-12

3.  Dehydration propensity of order-disorder intermediate regions in soluble proteins.

Authors:  Natalia Pietrosemoli; Alejandro Crespo; Ariel Fernandez
Journal:  J Proteome Res       Date:  2007-08-02       Impact factor: 4.466

4.  Solvent-exposed backbone loosens the hydration shell of soluble folded proteins.

Authors:  Ariel Fernández; Jianping Chen; Alejandro Crespo
Journal:  J Chem Phys       Date:  2007-06-28       Impact factor: 3.488

Review 5.  Anatomy of hot spots in protein interfaces.

Authors:  A A Bogan; K S Thorn
Journal:  J Mol Biol       Date:  1998-07-03       Impact factor: 5.469

6.  Context-based identification of protein-protein interfaces and "hot-spot" residues.

Authors:  Tim Geppert; Benjamin Hoy; Silja Wessler; Gisbert Schneider
Journal:  Chem Biol       Date:  2011-03-25

7.  Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles.

Authors:  G Schreiber; A R Fersht
Journal:  J Mol Biol       Date:  1995-04-28       Impact factor: 5.469

8.  ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions.

Authors:  K S Thorn; A A Bogan
Journal:  Bioinformatics       Date:  2001-03       Impact factor: 6.937

9.  Non-adaptive origins of interactome complexity.

Authors:  Ariel Fernández; Michael Lynch
Journal:  Nature       Date:  2011-05-18       Impact factor: 49.962

10.  'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces.

Authors:  Jinyan Li; Qian Liu
Journal:  Bioinformatics       Date:  2009-01-29       Impact factor: 6.937

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  5 in total

1.  Protein packing defects "heat up" interfacial water.

Authors:  María Belén Sierra; Sebastián R Accordino; J Ariel Rodriguez-Fris; Marcela A Morini; Gustavo A Appignanesi; Ariel Fernández Stigliano
Journal:  Eur Phys J E Soft Matter       Date:  2013-06-25       Impact factor: 1.890

2.  "Chameleonic" backbone hydrogen bonds in protein binding and as drug targets.

Authors:  C A Menéndez; S R Accordino; D C Gerbino; G A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2015-10-19       Impact factor: 1.890

3.  Studies on electrostatic interactions within model nano-confined aqueous environments of different chemical nature.

Authors:  Joan Manuel Montes de Oca; Cintia A Menéndez; Sebastián R Accordino; David C Malaspina; Gustavo A Appignanesi
Journal:  Eur Phys J E Soft Matter       Date:  2017-09-20       Impact factor: 1.890

4.  Hydrogen Bond Dynamic Propensity Studies for Protein Binding and Drug Design.

Authors:  Cintia A Menéndez; Sebastián R Accordino; Darío C Gerbino; Gustavo A Appignanesi
Journal:  PLoS One       Date:  2016-10-28       Impact factor: 3.240

5.  Wrapping effects within a proposed function-rescue strategy for the Y220C oncogenic mutation of protein p53.

Authors:  Sebastián R Accordino; J Ariel Rodríguez Fris; Gustavo A Appignanesi
Journal:  PLoS One       Date:  2013-01-24       Impact factor: 3.240

  5 in total

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