Literature DB >> 12862464

Inactivation of nitroalkane oxidase upon mutation of the active site base and rescue with a deprotonated substrate.

Michael P Valley1, Paul F Fitzpatrick.   

Abstract

Mutation of Asp402 in nitroalkane oxidase to Asn or Ala inactivates the enzyme with neutral nitroethane as substrate, but the activity can be rescued with the nitroethane anion. The V/K values of the D402N and D402A enzymes with the nitroethane anion are independent of pH, whereas the V/K values of the wild-type and D402E enzymes are pH dependent with both the protonated and the deprotonated forms of nitroethane. Moreover, although the V/K value of the D402E enzyme with neutral nitroethane is 20-fold less than that of the wild-type enzyme, there is only a 2-fold difference in the V/K values with the nitroethane anion. These results are fully consistent with a primary role for Asp402 as the active site base in nitroalkane oxidase which abstracts the substrate alpha-proton.

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Year:  2003        PMID: 12862464      PMCID: PMC1780277          DOI: 10.1021/ja036045s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  5 in total

1.  Identification of the naturally occurring flavin of nitroalkane oxidase from fusarium oxysporum as a 5-nitrobutyl-FAD and conversion of the enzyme to the active FAD-containing form.

Authors:  G Gadda; R D Edmondson; D H Russell; P F Fitzpatrick
Journal:  J Biol Chem       Date:  1997-02-28       Impact factor: 5.157

2.  Mechanism of nitroalkane oxidase: 2. pH and kinetic isotope effects.

Authors:  G Gadda; P F Fitzpatrick
Journal:  Biochemistry       Date:  2000-02-15       Impact factor: 3.162

3.  Purification and properties of nitroalkane oxidase from Fusarium oxysporum.

Authors:  T Kido; K Hashizume; K Soda
Journal:  J Bacteriol       Date:  1978-01       Impact factor: 3.490

4.  Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily.

Authors:  S Colette Daubner; Giovanni Gadda; Michael P Valley; Paul F Fitzpatrick
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

5.  Reductive half-reaction of nitroalkane oxidase: effect of mutation of the active site aspartate to glutamate.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

  5 in total
  12 in total

1.  Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover.

Authors:  Akanksha Nagpal; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Biochemistry       Date:  2006-01-31       Impact factor: 3.162

2.  Crystal structures of intermediates in the nitroalkane oxidase reaction.

Authors:  Annie Héroux; Dragana M Bozinovski; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Biochemistry       Date:  2009-04-21       Impact factor: 3.162

3.  Establishing the kinetic competency of the cationic imine intermediate in nitroalkane oxidase.

Authors:  Michael P Valley; Shane E Tichy; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2005-02-23       Impact factor: 15.419

4.  Differential quantum tunneling contributions in nitroalkane oxidase catalyzed and the uncatalyzed proton transfer reaction.

Authors:  Dan T Major; Annie Heroux; Allen M Orville; Michael P Valley; Paul F Fitzpatrick; Jiali Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

Review 5.  Nitroalkane oxidase: Structure and mechanism.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

6.  Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.

Authors:  José R Tormos; Alexander B Taylor; S Colette Daubner; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

7.  Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.

Authors:  Paul F Fitzpatrick; Dragana M Bozinovski; Annie Héroux; Patrick G Shaw; Michael P Valley; Allen M Orville
Journal:  Biochemistry       Date:  2007-11-10       Impact factor: 3.162

8.  Characterization of active site residues of nitroalkane oxidase.

Authors:  Michael P Valley; Nana S Fenny; Shah R Ali; Paul F Fitzpatrick
Journal:  Bioorg Chem       Date:  2009-12-28       Impact factor: 5.275

9.  Crystallization and preliminary analysis of active nitroalkane oxidase in three crystal forms.

Authors:  Akanksha Nagpal; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

10.  Comparison of enzymatic and non-enzymatic nitroethane anion formation: thermodynamics and contribution of tunneling.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2004-05-26       Impact factor: 15.419

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