Literature DB >> 12824418

ExPASy: The proteomics server for in-depth protein knowledge and analysis.

Elisabeth Gasteiger1, Alexandre Gattiker, Christine Hoogland, Ivan Ivanyi, Ron D Appel, Amos Bairoch.   

Abstract

The ExPASy (the Expert Protein Analysis System) World Wide Web server (http://www.expasy.org), is provided as a service to the life science community by a multidisciplinary team at the Swiss Institute of Bioinformatics (SIB). It provides access to a variety of databases and analytical tools dedicated to proteins and proteomics. ExPASy databases include SWISS-PROT and TrEMBL, SWISS-2DPAGE, PROSITE, ENZYME and the SWISS-MODEL repository. Analysis tools are available for specific tasks relevant to proteomics, similarity searches, pattern and profile searches, post-translational modification prediction, topology prediction, primary, secondary and tertiary structure analysis and sequence alignment. These databases and tools are tightly interlinked: a special emphasis is placed on integration of database entries with related resources developed at the SIB and elsewhere, and the proteomics tools have been designed to read the annotations in SWISS-PROT in order to enhance their predictions. ExPASy started to operate in 1993, as the first WWW server in the field of life sciences. In addition to the main site in Switzerland, seven mirror sites in different continents currently serve the user community.

Mesh:

Substances:

Year:  2003        PMID: 12824418      PMCID: PMC168970          DOI: 10.1093/nar/gkg563

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  The ENZYME database in 2000.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The 1999 SWISS-2DPAGE database update.

Authors:  C Hoogland; J C Sanchez; L Tonella; P A Binz; A Bairoch; D F Hochstrasser; R D Appel
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  The PROSITE database, its status in 2002.

Authors:  Laurent Falquet; Marco Pagni; Philipp Bucher; Nicolas Hulo; Christian J A Sigrist; Kay Hofmann; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  FindPept, a tool to identify unmatched masses in peptide mass fingerprinting protein identification.

Authors:  Alexandre Gattiker; Willy V Bienvenut; Amos Bairoch; Elisabeth Gasteiger
Journal:  Proteomics       Date:  2002-10       Impact factor: 3.984

5.  The Sulfinator: predicting tyrosine sulfation sites in protein sequences.

Authors:  Flavio Monigatti; Elisabeth Gasteiger; Amos Bairoch; Eva Jung
Journal:  Bioinformatics       Date:  2002-05       Impact factor: 6.937

6.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  High-quality protein knowledge resource: SWISS-PROT and TrEMBL.

Authors:  Claire O'Donovan; Maria Jesus Martin; Alexandre Gattiker; Elisabeth Gasteiger; Amos Bairoch; Rolf Apweiler
Journal:  Brief Bioinform       Date:  2002-09       Impact factor: 11.622

8.  PROSITE: a documented database using patterns and profiles as motif descriptors.

Authors:  Christian J A Sigrist; Lorenzo Cerutti; Nicolas Hulo; Alexandre Gattiker; Laurent Falquet; Marco Pagni; Amos Bairoch; Philipp Bucher
Journal:  Brief Bioinform       Date:  2002-09       Impact factor: 11.622

9.  GlycoMod--a software tool for determining glycosylation compositions from mass spectrometric data.

Authors:  C A Cooper; E Gasteiger; N H Packer
Journal:  Proteomics       Date:  2001-02       Impact factor: 3.984

Review 10.  SWISS-PROT: connecting biomolecular knowledge via a protein database.

Authors:  E Gasteiger; E Jung; A Bairoch
Journal:  Curr Issues Mol Biol       Date:  2001-07       Impact factor: 2.081

View more
  1407 in total

1.  Anaphase-promoting complex/cyclosome-Cdh1 coordinates glycolysis and glutaminolysis with transition to S phase in human T lymphocytes.

Authors:  Sergio L Colombo; Miriam Palacios-Callender; Nanci Frakich; Joel De Leon; Christoph A Schmitt; Leanne Boorn; Nicola Davis; Salvador Moncada
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  Protofilament Structure and Supramolecular Polymorphism of Aggregated Mutant Huntingtin Exon 1.

Authors:  Jennifer C Boatz; Talia Piretra; Alessia Lasorsa; Irina Matlahov; James F Conway; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2020-06-27       Impact factor: 5.469

Review 3.  Using the reconstructed genome-scale human metabolic network to study physiology and pathology.

Authors:  A Bordbar; B O Palsson
Journal:  J Intern Med       Date:  2012-02       Impact factor: 8.989

4.  Combining isoelectric point-based fractionation, liquid chromatography and mass spectrometry to improve peptide detection and protein identification.

Authors:  Stephanie M Cologna; William K Russell; Peniel J Lim; Gyula Vigh; David H Russell
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-24       Impact factor: 3.109

5.  Evolution of multicomponent pheromone signals in small ermine moths involves a single fatty-acyl reductase gene.

Authors:  Marjorie A Liénard; Asa K Hagström; Jean-Marc Lassance; Christer Löfstedt
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

6.  Characterization of a cold-adapted DNA photolyase from C. psychrerythraea 34H.

Authors:  Sudipto Munshi; Ananthi Rajamoorthi; Robert J Stanley
Journal:  Extremophiles       Date:  2017-07-19       Impact factor: 2.395

7.  Identification and functional characterization of nonmammalian Toll-like receptor 20.

Authors:  Danilo Pietretti; Marleen Scheer; Inge R Fink; Nico Taverne; Huub F J Savelkoul; Herman P Spaink; Maria Forlenza; Geert F Wiegertjes
Journal:  Immunogenetics       Date:  2013-12-11       Impact factor: 2.846

8.  Homology modeling and molecular dynamics simulations of transmembrane domain structure of human neuronal nicotinic acetylcholine receptor.

Authors:  Alexander C Saladino; Yan Xu; Pei Tang
Journal:  Biophys J       Date:  2004-12-01       Impact factor: 4.033

9.  Bacterial growth at -15 °C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1.

Authors:  Nadia C S Mykytczuk; Simon J Foote; Chris R Omelon; Gordon Southam; Charles W Greer; Lyle G Whyte
Journal:  ISME J       Date:  2013-02-07       Impact factor: 10.302

10.  Haplotype analysis of CYP11A1 identifies promoter variants associated with breast cancer risk.

Authors:  Brian L Yaspan; Joan P Breyer; Qiuyin Cai; Qi Dai; J Bradford Elmore; Isaac Amundson; Kevin M Bradley; Xiao-Ou Shu; Yu-Tang Gao; William D Dupont; Wei Zheng; Jeffrey R Smith
Journal:  Cancer Res       Date:  2007-06-15       Impact factor: 12.701

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.