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Literature DB >> 11752303

The PROSITE database, its status in 2002.

Laurent Falquet¹, Marco Pagni, Philipp Bucher, Nicolas Hulo, Christian J A Sigrist, Kay Hofmann, Amos Bairoch.

Abstract

PROSITE [Bairoch and Bucher (1994) Nucleic Acids Res., 22, 3583-3589; Hofmann et al. (1999) Nucleic Acids Res., 27, 215-219] is a method of identifying the functions of uncharacterized proteins translated from genomic or cDNA sequences. The PROSITE database (http://www.expasy.org/prosite/) consists of biologically significant patterns and profiles designed in such a way that with appropriate computational tools it can rapidly and reliably help to determine to which known family of proteins (if any) a new sequence belongs, or which known domain(s) it contains.

Mesh：

Substances：
Proteins

Year: 2002 PMID： 11752303 PMCID： PMC99105 DOI： 10.1093/nar/30.1.235

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

14 in total

1. The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors: R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

2. The EMBL nucleotide sequence database.

Authors: G Stoesser; W Baker; A van den Broek; E Camon; M Garcia-Pastor; C Kanz; T Kulikova; V Lombard; R Lopez; H Parkinson; N Redaschi; P Sterk; P Stoehr; M A Tuli
Journal: Nucleic Acids Res Date: 2001-01-01 Impact factor: 16.971

3. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors: A Bairoch; R Apweiler
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

4. The PROSITE database, its status in 1999.

Authors: K Hofmann; P Bucher; L Falquet; A Bairoch
Journal: Nucleic Acids Res Date: 1999-01-01 Impact factor: 16.971

5. Profile analysis.

Authors: M Gribskov; R Lüthy; D Eisenberg
Journal: Methods Enzymol Date: 1990 Impact factor: 1.600

6. Profile analysis: detection of distantly related proteins.

Authors: M Gribskov; A D McLachlan; D Eisenberg
Journal: Proc Natl Acad Sci U S A Date: 1987-07 Impact factor: 11.205

7. Improved sensitivity of profile searches through the use of sequence weights and gap excision.

Authors: J D Thompson; D G Higgins; T J Gibson
Journal: Comput Appl Biosci Date: 1994-02

Review 8. Sequence analysis by electronic mail server.

Authors: S Henikoff
Journal: Trends Biochem Sci Date: 1993-07 Impact factor: 13.807

9. PROSITE: recent developments.

Authors: A Bairoch; P Bucher
Journal: Nucleic Acids Res Date: 1994-09 Impact factor: 16.971

10. A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server.

Authors: R D Appel; A Bairoch; D F Hochstrasser
Journal: Trends Biochem Sci Date: 1994-06 Impact factor: 13.807

284 in total

1. LIGAND: database of chemical compounds and reactions in biological pathways.

Authors: Susumu Goto; Yasushi Okuno; Masahiro Hattori; Takaaki Nishioka; Minoru Kanehisa
Journal: Nucleic Acids Res Date: 2002-01-01 Impact factor: 16.971

2. A strategy to retrieve the whole set of protein modules in microbial proteomes.

Authors: Stéphanie Le Bouder-Langevin; Isabelle Capron-Montaland; Renaud De Rosa; Bernard Labedan
Journal: Genome Res Date: 2002-12 Impact factor: 9.043

3. The extreme dwarf phenotype of the GA-sensitive mutant of sunflower, dwarf2, is generated by a deletion in the ent-kaurenoic acid oxidase1 (HaKAO1) gene sequence.

Authors: Marco Fambrini; Lorenzo Mariotti; Sandro Parlanti; Piero Picciarelli; Mariangela Salvini; Nello Ceccarelli; Claudio Pugliesi
Journal: Plant Mol Biol Date: 2011-02-01 Impact factor: 4.076

4. Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets.

Authors: Chantal Abergel; Bruno Coutard; Deborah Byrne; Sabine Chenivesse; Jean-Baptiste Claude; Céline Deregnaucourt; Thierry Fricaux; Celine Gianesini-Boutreux; Sandra Jeudy; Régine Lebrun; Caroline Maza; Cédric Notredame; Olivier Poirot; Karsten Suhre; Majorie Varagnol; Jean-Michel Claverie
Journal: J Struct Funct Genomics Date: 2003

5. Conformational analysis of the carboxy-terminal tails of human beta-tubulin isotypes.

Authors: Tyler Luchko; J Torin Huzil; Maria Stepanova; Jack Tuszynski
Journal: Biophys J Date: 2007-11-09 Impact factor: 4.033

6. Crystal structure of the YgfZ protein from Escherichia coli suggests a folate-dependent regulatory role in one-carbon metabolism.

Authors: Alexey Teplyakov; Galina Obmolova; Elif Sarikaya; Sadhana Pullalarevu; Wojciech Krajewski; Andrey Galkin; Andrew J Howard; Osnat Herzberg; Gary L Gilliland
Journal: J Bacteriol Date: 2004-11 Impact factor: 3.490

7. Novel activator of mannose-specific phosphotransferase system permease expression in Listeria innocua, identified by screening for pediocin AcH resistance.

Authors: Junfeng Xue; Ian Hunter; Tori Steinmetz; Adam Peters; Bibek Ray; Kurt W Miller
Journal: Appl Environ Microbiol Date: 2005-03 Impact factor: 4.792

8. Legionella pneumophila type II protein secretion promotes virulence in the A/J mouse model of Legionnaires' disease pneumonia.

Authors: Ombeline Rossier; Shawn R Starkenburg; Nicholas P Cianciotto
Journal: Infect Immun Date: 2004-01 Impact factor: 3.441

9. Modulation of KSR activity in Caenorhabditis elegans by Zn ions, PAR-1 kinase and PP2A phosphatase.

Authors: John H Yoder; Huira Chong; Kun-Liang Guan; Min Han
Journal: EMBO J Date: 2003-12-11 Impact factor: 11.598

10. The ire1 and ptc2 genes involved in the unfolded protein response pathway in the filamentous fungus Trichoderma reesei.

Authors: M Valkonen; M Penttilä; M Saloheimo
Journal: Mol Genet Genomics Date: 2004-10-08 Impact factor: 3.291