Literature DB >> 10592248

The 1999 SWISS-2DPAGE database update.

C Hoogland1, J C Sanchez, L Tonella, P A Binz, A Bairoch, D F Hochstrasser, R D Appel.   

Abstract

SWISS-2DPAGE (http://www.expasy.ch/ch2d/ ) is an annotated two-dimensional polyacrylamide gel electro-phoresis (2-DE) database established in 1993. The current release contains 24 reference maps from human and mouse biological samples, as well as from Saccharomyces cerevisiae, Escherichia coli and Dictyostelium discoideum origin. These reference maps have now 2824 identified spots, corresponding to 614 separate protein entries in the database, in addition to virtual entries for each SWISS-PROT sequence or any user-entered amino acids sequence. Last year improvements in the SWISS-2DPAGE database are as follows: three new maps have been created and several others have been updated; cross-references to newly built federated 2-DE databases have been added; new functions to access the data have been provided through the ExPASy proteomics server.

Entities:  

Mesh：

Year:  2000        PMID： 10592248      PMCID： PMC102456          DOI： 10.1093/nar/28.1.286

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  12 in total

1.  Mapping and identification of HeLa cell proteins separated by immobilized pH-gradient two-dimensional gel electrophoresis and construction of a two-dimensional polyacrylamide gel electrophoresis database.

Authors:  A C Shaw; M Røssel Larsen; P Roepstorff; A Holm; G Christiansen; S Birkelund
Journal:  Electrophoresis       Date:  1999 Apr-May       Impact factor: 3.535

2.  Melanie II--a third-generation software package for analysis of two-dimensional electrophoresis images: I. Features and user interface.

Authors:  R D Appel; P M Palagi; D Walther; J R Vargas; J C Sanchez; F Ravier; C Pasquali; D F Hochstrasser
Journal:  Electrophoresis       Date:  1997-12       Impact factor: 3.535

3.  Mapping of Chlamydia trachomatis proteins by immobiline-polyacrylamide two-dimensional electrophoresis: spot identification by N-terminal sequencing and immunoblotting.

Authors:  L Bini; M Sanchez-Campillo; A Santucci; B Magi; B Marzocchi; M Comanducci; G Christiansen; S Birkelund; R Cevenini; E Vretou; G Ratti; V Pallini
Journal:  Electrophoresis       Date:  1996-01       Impact factor: 3.535

4.  Yeast Protein database (YPD): a database for the complete proteome of Saccharomyces cerevisiae.

Authors:  W E Payne; J I Garrels
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

Review 5.  Escherichia coli proteome analysis using the gene-protein database.

Authors:  R A VanBogelen; K Z Abshire; B Moldover; E R Olson; F C Neidhardt
Journal:  Electrophoresis       Date:  1997-08       Impact factor: 3.535

Review 6.  SWISS-2DPAGE: a database of two-dimensional gel electrophoresis images.

Authors:  R D Appel; J C Sanchez; A Bairoch; O Golaz; M Miu; J R Vargas; D F Hochstrasser
Journal:  Electrophoresis       Date:  1993-11       Impact factor: 3.535

7.  The status of online Mendelian inheritance in man (OMIM) medio 1994.

Authors:  P Pearson; C Francomano; P Foster; C Bocchini; P Li; V McKusick
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

8.  Two-dimensional gel electrophoresis of Caenorhabditis elegans homogenates and identification of protein spots by microsequencing.

Authors:  L Bini; H Heid; S Liberatori; G Geier; V Pallini; R Zwilling
Journal:  Electrophoresis       Date:  1997 Mar-Apr       Impact factor: 3.535

9.  Mapping and identification of interferon gamma-regulated HeLa cell proteins separated by immobilized pH gradient two-dimensional gel electrophoresis.

Authors:  A C Shaw; M Røssel Larsen; P Roepstorff; J Justesen; G Christiansen; S Birkelund
Journal:  Electrophoresis       Date:  1999 Apr-May       Impact factor: 3.535

10.  HSC-2DPAGE and the two-dimensional gel electrophoresis database of dog heart proteins.

Authors:  M J Dunn; J M Corbett; C H Wheeler
Journal:  Electrophoresis       Date:  1997-12       Impact factor: 3.535
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  17 in total

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Authors:  Markus Müller; Robin Gras; Ron D Appel; Willy V Bienvenut; Denis F Hochstrasser
Journal:  J Am Soc Mass Spectrom       Date:  2002-03       Impact factor: 3.109

2.  GELBANK: a database of annotated two-dimensional gel electrophoresis patterns of biological systems with completed genomes.

Authors:  György Babnigg; Carol S Giometti
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  ExPASy: The proteomics server for in-depth protein knowledge and analysis.

Authors:  Elisabeth Gasteiger; Alexandre Gattiker; Christine Hoogland; Ivan Ivanyi; Ron D Appel; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

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Authors:  Michel Schneider; Amos Bairoch; Cathy H Wu; Rolf Apweiler
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Review 5.  Redox proteomics in some age-related neurodegenerative disorders or models thereof.

Authors:  D Allan Butterfield; Hafiz Mohmmad Abdul; Shelley Newman; Tanea Reed
Journal:  NeuroRx       Date:  2006-07

Review 6.  Plant systems biology: insights, advances and challenges.

Authors:  Bhavisha P Sheth; Vrinda S Thaker
Journal:  Planta       Date:  2014-03-27       Impact factor: 4.116

7.  Rice proteome database: a step toward functional analysis of the rice genome.

Authors:  Setsuko Komatsu
Journal:  Plant Mol Biol       Date:  2005-09       Impact factor: 4.076

8.  Rice Proteome Database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003.

Authors:  Setsuko Komatsu; Keiichi Kojima; Kouji Suzuki; Kazuo Ozaki; Kenichi Higo
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 9.  Amyloid β-peptide (1-42)-induced oxidative stress in Alzheimer disease: importance in disease pathogenesis and progression.

Authors:  D Allan Butterfield; Aaron M Swomley; Rukhsana Sultana
Journal:  Antioxid Redox Signal       Date:  2013-02-14       Impact factor: 8.401

Review 10.  Roles of amyloid beta-peptide-associated oxidative stress and brain protein modifications in the pathogenesis of Alzheimer's disease and mild cognitive impairment.

Authors:  D Allan Butterfield; Tanea Reed; Shelley F Newman; Rukhsana Sultana
Journal:  Free Radic Biol Med       Date:  2007-06-13       Impact factor: 7.376
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