Literature DB >> 12230036

High-quality protein knowledge resource: SWISS-PROT and TrEMBL.

Claire O'Donovan1, Maria Jesus Martin, Alexandre Gattiker, Elisabeth Gasteiger, Amos Bairoch, Rolf Apweiler.   

Abstract

SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc.), a minimal level of redundancy and a high level of integration with other databases. Together with its automatically annotated supplement TrEMBL, it provides a comprehensive and high-quality view of the current state of knowledge about proteins. Ongoing developments include the further improvement of functional and automatic annotation in the databases including evidence attribution with particular emphasis on the human, archaeal and bacterial proteomes and the provision of additional resources such as the International Protein Index (IPI) and XML format of SWISS-PROT and TrEMBL to the user community.

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Year:  2002        PMID: 12230036     DOI: 10.1093/bib/3.3.275

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  79 in total

1.  The German cDNA network: cDNAs, functional genomics and proteomics.

Authors:  Stefan Wiemann; Stephanie Bechtel; Detlev Bannasch; Rainer Pepperkok; Annemarie Poustka
Journal:  J Struct Funct Genomics       Date:  2003

2.  A multimeric model for murine anti-apoptotic protein Bcl-2 and structural insights for its regulation by post-translational modification.

Authors:  Venkatarajan S Mathura; Kizhake V Soman; Tushar K Varma; Werner Braun
Journal:  J Mol Model       Date:  2003-08-30       Impact factor: 1.810

3.  The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.

Authors:  Brigitte Boeckmann; Amos Bairoch; Rolf Apweiler; Marie-Claude Blatter; Anne Estreicher; Elisabeth Gasteiger; Maria J Martin; Karine Michoud; Claire O'Donovan; Isabelle Phan; Sandrine Pilbout; Michel Schneider
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  NetAffx: Affymetrix probesets and annotations.

Authors:  Guoying Liu; Ann E Loraine; Ron Shigeta; Melissa Cline; Jill Cheng; Venu Valmeekam; Shaw Sun; David Kulp; Michael A Siani-Rose
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  ExPASy: The proteomics server for in-depth protein knowledge and analysis.

Authors:  Elisabeth Gasteiger; Alexandre Gattiker; Christine Hoogland; Ivan Ivanyi; Ron D Appel; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

6.  LumenP--a neural network predictor for protein localization in the thylakoid lumen.

Authors:  Isabelle Westerlund; Gunnar Von Heijne; Olof Emanuelsson
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

7.  DNA-energetics-based analyses suggest additional genes in prokaryotes.

Authors:  Garima Khandelwal; Jalaj Gupta; B Jayaram
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

8.  A Continuum Poisson-Boltzmann Model for Membrane Channel Proteins.

Authors:  Li Xiao; Jianxiong Diao; D'Artagnan Greene; Junmei Wang; Ray Luo
Journal:  J Chem Theory Comput       Date:  2017-06-14       Impact factor: 6.006

9.  The identification of Pcl1-interacting proteins that genetically interact with Cla4 may indicate a link between G1 progression and mitotic exit.

Authors:  Megan E Keniry; Hilary A Kemp; David M Rivers; George F Sprague
Journal:  Genetics       Date:  2004-03       Impact factor: 4.562

10.  Oxidative cross-linking of proteins to DNA following ischemia-reperfusion injury.

Authors:  Arnold Groehler; Stefan Kren; Qinglu Li; Maggie Robledo-Villafane; Joshua Schmidt; Mary Garry; Natalia Tretyakova
Journal:  Free Radic Biol Med       Date:  2018-03-11       Impact factor: 7.376

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