Literature DB >> 12769594

Measurement of multiple psi torsion angles in uniformly 13C,15N-labeled alpha-spectrin SH3 domain using 3D 15N-13C-13C-15N MAS dipolar-chemical shift correlation spectroscopy.

Vladimir Ladizhansky1, Christopher P Jaroniec, Annette Diehl, Hartmut Oschkinat, Robert G Griffin.   

Abstract

We demonstrate the simultaneous measurement of several backbone torsion angles psi in the uniformly (13)C,(15)N-labeled alpha-Spectrin SH3 domain using two different 3D 15N-13C-13C-15N dipolar-chemical shift magic-angle spinning (MAS) NMR experiments. The first NCCN experiment utilizes double quantum (DQ) spectroscopy combined with the INADEQUATE type 13C-13C chemical shift correlation. The decay of the DQ coherences formed between 13C'(i) and 13C(alphai) spin pairs is determined by the "correlated" dipolar field due to 15N(i)-13C(alphai) and 13C'(i)-15N(i+1) dipolar couplings and is particularly sensitive to variations of the torsion angle in the regime |psi| > 140 degrees. However, the ability of this experiment to constrain multiple psi-torsion angles is limited by the resolution of the 13C(alpha)-(13)CO correlation spectrum. This problem is partially addressed in the second approach described here, which is an NCOCA NCCN experiment. In this case the resolution is enhanced by the superior spectral dispersion of the 15N resonances present in the 15N(i+1)-13C(alphai) part of the NCOCA chemical shift correlation spectrum. For the case of the 62-residue alpha-spectrin SH3 domain, we determined 13 psi angle constraints with the INADEQUATE NCCN experiment and 22 psi constraints were measured in the NCOCA NCCN experiment.

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Year:  2003        PMID: 12769594     DOI: 10.1021/ja029082c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Peptide bond conformation in peptides and proteins probed by dipolar coupling-chemical shift tensor correlation solid-state NMR.

Authors:  Dwaipayan Mukhopadhyay; Chitrak Gupta; Theint Theint; Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2018-10-30       Impact factor: 2.229

Review 2.  Magnetic resonance in the solid state: applications to protein folding, amyloid fibrils and membrane proteins.

Authors:  Marc Baldus
Journal:  Eur Biophys J       Date:  2007-05-31       Impact factor: 1.733

Review 3.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

4.  Conformational disorder of membrane peptides investigated from solid-state NMR line widths and line shapes.

Authors:  Yongchao Su; Mei Hong
Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

5.  Magic-angle-spinning NMR of the drug resistant S31N M2 proton transporter from influenza A.

Authors:  Loren B Andreas; Matthew T Eddy; James J Chou; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2012-04-23       Impact factor: 15.419

6.  Dipole tensor-based atomic-resolution structure determination of a nanocrystalline protein by solid-state NMR.

Authors:  W Trent Franks; Benjamin J Wylie; Heather L Frericks Schmidt; Andrew J Nieuwkoop; Rebecca-Maria Mayrhofer; Gautam J Shah; Daniel T Graesser; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-14       Impact factor: 11.205

7.  Proton assisted recoupling and protein structure determination.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-12-28       Impact factor: 3.488

8.  Observation of a low-temperature, dynamically driven structural transition in a polypeptide by solid-state NMR spectroscopy.

Authors:  Vikram S Bajaj; Patrick C A van der Wel; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2009-01-14       Impact factor: 15.419

9.  (15)N-(15)N proton assisted recoupling in magic angle spinning NMR.

Authors:  Józef R Lewandowski; Gaël De Paëpe; Matthew T Eddy; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2009-04-29       Impact factor: 15.419

Review 10.  Structure determination of membrane proteins by nuclear magnetic resonance spectroscopy.

Authors:  Stanley J Opella
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2013-04-01       Impact factor: 10.745

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