Literature DB >> 19067520

Observation of a low-temperature, dynamically driven structural transition in a polypeptide by solid-state NMR spectroscopy.

Vikram S Bajaj1, Patrick C A van der Wel, Robert G Griffin.   

Abstract

At reduced temperatures, proteins and other biomolecules are generally found to exhibit dynamic as well as structural transitions. This includes a so-called protein glass transition that is universally observed in systems cooled between 200 and 230 K, and which is generally attributed to interactions between hydrating solvent molecules and protein side chains. However, there is also experimental and theoretical evidence for a low-temperature transition in the intrinsic dynamics of the protein itself, absent any solvent. Here, we use low-temperature solid-state NMR to examine site-specific fluctuations in atomic structure and dynamics in the absence of solvents. In particular, we employ magic angle spinning NMR to examine a structural phase transition associated with dynamic processes in a solvent-free polypeptide, N-f-MLF-OH, lattice at temperatures as low as 90 K. This transition is characterized by the appearance of an extra set of lines in 1D (15)N spectra as well as additional cross peaks in 2D (13)C-(13)C and (13)C-(15)N spectra. Interestingly, the gradual, temperature-dependent appearance of the new spectral component is not accompanied by the line broadening typical of dynamic transitions. A direct comparison between the spectra of N-f-MLF-OH and the analog N-f-MLF-OMe, which does not display this transition, indicates a correlation of the structural transition to the temperature dependent motion of the aromatic phenylalanine side chain. Several quantitative solid state NMR experiments were employed to provide site-specific measurements of structural and motional features of the observed transition.

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Year:  2009        PMID: 19067520      PMCID: PMC2651395          DOI: 10.1021/ja8045926

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  54 in total

1.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

Review 2.  The 'glass transition' in protein dynamics: what it is, why it occurs, and how to exploit it.

Authors:  Dagmar Ringe; Gregory A Petsko
Journal:  Biophys Chem       Date:  2003-09       Impact factor: 2.352

3.  Temperature- and hydration-dependent protein dynamics in photosystem II of green plants studied by quasielastic neutron scattering.

Authors:  Jörg Pieper; Thomas Hauss; Alexandra Buchsteiner; Krzysztof Baczyński; Karolina Adamiak; Ruep E Lechner; Gernot Renger
Journal:  Biochemistry       Date:  2007-09-15       Impact factor: 3.162

4.  Determination of the peptide torsion angle phi by 15N chemical shift and 13Calpha-1Halpha dipolar tensor correlation in solid-state MAS NMR.

Authors:  M Hong; J D Gross; W Hu; R G Griffin
Journal:  J Magn Reson       Date:  1998-11       Impact factor: 2.229

5.  Polarization-enhanced NMR spectroscopy of biomolecules in frozen solution.

Authors:  D A Hall; D C Maus; G J Gerfen; S J Inati; L R Becerra; F W Dahlquist; R G Griffin
Journal:  Science       Date:  1997-05-09       Impact factor: 47.728

6.  NMR determination of the torsion angle psi in alpha-helical peptides and proteins: the HCCN dipolar correlation experiment.

Authors:  Vladimir Ladizhansky; Mikhail Veshtort; Robert G Griffin
Journal:  J Magn Reson       Date:  2002-02       Impact factor: 2.229

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Crystal structure, conformation, and potential energy calculations of the chemotactic peptide N-formyl-L-Met-L-Leu-L-Phe-OMe.

Authors:  E Gavuzzo; F Mazza; G Pochetti; A Scatturin
Journal:  Int J Pept Protein Res       Date:  1989-11

9.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

10.  Design of a data model for developing laboratory information management and analysis systems for protein production.

Authors:  Anne Pajon; John Ionides; Jon Diprose; Joël Fillon; Rasmus Fogh; Alun W Ashton; Helen Berman; Wayne Boucher; Miroslaw Cygler; Emeline Deleury; Robert Esnouf; Joël Janin; Rosalind Kim; Isabelle Krimm; Catherine L Lawson; Eric Oeuillet; Anne Poupon; Stéphane Raymond; Tim Stevens; Herman van Tilbeurgh; John Westbrook; Peter Wood; Eldon Ulrich; Wim Vranken; Li Xueli; Ernest Laue; David I Stuart; Kim Henrick
Journal:  Proteins       Date:  2005-02-01
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  32 in total

1.  Resolution and polarization distribution in cryogenic DNP/MAS experiments.

Authors:  Alexander B Barnes; Björn Corzilius; Melody L Mak-Jurkauskas; Loren B Andreas; Vikram S Bajaj; Yoh Matsuki; Marina L Belenky; Johan Lugtenburg; Jagadishwar R Sirigiri; Richard J Temkin; Judith Herzfeld; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

2.  Cryogenic solid state NMR studies of fibrils of the Alzheimer's disease amyloid-β peptide: perspectives for DNP.

Authors:  Juan-Miguel Lopez del Amo; Dennis Schneider; Antoine Loquet; Adam Lange; Bernd Reif
Journal:  J Biomol NMR       Date:  2013-06-22       Impact factor: 2.835

3.  Role of methyl groups in dynamics and evolution of biomolecules.

Authors:  Jonathan D Nickels; Joseph E Curtis; Hugh O'Neill; Alexei P Sokolov
Journal:  J Biol Phys       Date:  2012-04-14       Impact factor: 1.365

4.  Cryogenic temperature effects and resolution upon slow cooling of protein preparations in solid state NMR.

Authors:  Arne H Linden; W Trent Franks; Ümit Akbey; Sascha Lange; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2011-08-09       Impact factor: 2.835

5.  Line-Broadening in Low-Temperature Solid-State NMR Spectra of Fibrils.

Authors:  Thomas Bauer; Claudio Dotta; Livia Balacescu; Julia Gath; Andreas Hunkeler; Anja Böckmann; Beat H Meier
Journal:  J Biomol NMR       Date:  2017-02-04       Impact factor: 2.835

6.  Topical Developments in High-Field Dynamic Nuclear Polarization.

Authors:  Vladimir K Michaelis; Ta-Chung Ong; Matthew K Kiesewetter; Derik K Frantz; Joseph J Walish; Enrico Ravera; Claudio Luchinat; Timothy M Swager; Robert G Griffin
Journal:  Isr J Chem       Date:  2014-02-13       Impact factor: 3.333

7.  THz Dynamic Nuclear Polarization NMR.

Authors:  Emilio A Nanni; Alexander B Barnes; Robert G Griffin; Richard J Temkin
Journal:  IEEE Trans Terahertz Sci Technol       Date:  2011-08-29       Impact factor: 3.274

8.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

9.  (17)O NMR Investigation of Water Structure and Dynamics.

Authors:  Eric G Keeler; Vladimir K Michaelis; Robert G Griffin
Journal:  J Phys Chem B       Date:  2016-08-09       Impact factor: 2.991

10.  Cryogenic sample exchange NMR probe for magic angle spinning dynamic nuclear polarization.

Authors:  Alexander B Barnes; Melody L Mak-Jurkauskas; Yoh Matsuki; Vikram S Bajaj; Patrick C A van der Wel; Ronald Derocher; Jeffrey Bryant; Jagadishwar R Sirigiri; Richard J Temkin; Johan Lugtenburg; Judith Herzfeld; Robert G Griffin
Journal:  J Magn Reson       Date:  2009-03-17       Impact factor: 2.229

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