Literature DB >> 12718931

Efficient protein crystallization.

Lawrence J DeLucas1, Terry L Bray, Lisa Nagy, Debbie McCombs, Nikolai Chernov, David Hamrick, Larry Cosenza, Alexander Belgovskiy, Brad Stoops, Arnon Chait.   

Abstract

High-throughput molecular biology and crystallography advances have placed an increasing demand on crystallization, the one remaining bottleneck in macromolecular crystallography. This paper describes three experimental approaches, an incomplete factorial crystallization screen, a high-throughput nanoliter crystallization system, and the use of a neural net to predict crystallization conditions via a small sample (approximately 0.1%) of screening results. The use of these technologies has the potential to reduce time and sample requirements. Initial experimental results indicate that the incomplete factorial design detects initial crystallization conditions not previously discovered using commercial screens. This may be due to the ability of the incomplete factorial screen to sample a broader portion of "crystallization space," using a multidimensional set of components, concentrations, and physical conditions. The incomplete factorial screen is complemented by a neural network program used to model crystallization. This capability is used to help predict new crystallization conditions. An automated, nanoliter crystallization system, with a throughput of up to 400 conditions/h in 40-nl droplets (total volume), accommodates microbatch or traditional "sitting-drop" vapor diffusion experiments. The goal of this research is to develop a fully-automated high-throughput crystallization system that integrates incomplete factorial screen and neural net capabilities.

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Year:  2003        PMID: 12718931     DOI: 10.1016/s1047-8477(03)00050-9

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  14 in total

Review 1.  Protein crystallization in the structural genomics era.

Authors:  Alexander McPherson
Journal:  J Struct Funct Genomics       Date:  2004

2.  Systematic investigation of protein phase behavior with a microfluidic formulator.

Authors:  Carl L Hansen; Morten O A Sommer; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-27       Impact factor: 11.205

3.  Protein production and crystallization at SECSG -- an overview.

Authors:  Bi-Cheng Wang; Michael W W Adams; Harry Dailey; Larry DeLucas; Ming Luo; John Rose; Robert Bunzel; Tamara Dailey; Jeff Habel; Peter Horanyi; Francis E Jenney; Irina Kataeva; Han-Seung Lee; Songlin Li; Ting Li; Dawei Lin; Zhi-Jie Liu; Chi-Hao Luan; Michael Mayer; Lisa Nagy; M Gary Newton; Joseph Ng; Farris L Poole; Ashit Shah; Claudia Shah; Frank J Sugar; Hao Xu
Journal:  J Struct Funct Genomics       Date:  2005

4.  Trace fluorescent labeling for high-throughput crystallography.

Authors:  Elizabeth Forsythe; Aniruddha Achari; Marc L Pusey
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-02-22

5.  Production, crystallization and X-ray characterization of chemically glycosylated hen egg-white lysozyme.

Authors:  F J López-Jaramillo; F Pérez-Banderas; F Hernández-Mateo; F Santoyo-González
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-04-01

Review 6.  Optimization of crystallization conditions for biological macromolecules.

Authors:  Alexander McPherson; Bob Cudney
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-31       Impact factor: 1.056

7.  A simple and effective calibration method to determine the accuracy of liquid-handling nano-dispenser devices.

Authors:  Sonia Rodríguez-Puente; Judith Linacero-Blanco; Alicia Guasch
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-02-23

Review 8.  Introduction to protein crystallization.

Authors:  Alexander McPherson; Jose A Gavira
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2013-12-24       Impact factor: 1.056

9.  Structural insights into the ubiquitin recognition by OPTN (optineurin) and its regulation by TBK1-mediated phosphorylation.

Authors:  Faxiang Li; Daichao Xu; Yingli Wang; Zixuan Zhou; Jianping Liu; Shichen Hu; Yukang Gong; Junying Yuan; Lifeng Pan
Journal:  Autophagy       Date:  2018-02-02       Impact factor: 16.016

10.  Automated discovery of novel drug formulations using predictive iterated high throughput experimentation.

Authors:  Filippo Caschera; Gianluca Gazzola; Mark A Bedau; Carolina Bosch Moreno; Andrew Buchanan; James Cawse; Norman Packard; Martin M Hanczyc
Journal:  PLoS One       Date:  2010-01-01       Impact factor: 3.240

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