Literature DB >> 15452343

Systematic investigation of protein phase behavior with a microfluidic formulator.

Carl L Hansen1, Morten O A Sommer, Stephen R Quake.   

Abstract

We demonstrated a microfluidic device for rapidly generating complex mixtures of 32 stock reagents in a 5-nl reactor. This "formulation chip" is fully automated and allows thousands of experiments to be performed in a single day with minimal reagent consumption. It was applied to systematically study the phase behavior of the protein xylanase over a large and complex chemical space. For each chemical formulation that demonstrated a pronounced effect on solubility, the protein phase behavior was completely mapped in the chip, generating a set of empirical phase diagrams. This ab initio phase information was used to devise a rational crystallization screen that resulted in 72-fold improvement in successful crystallization hits compared with conventional sparse matrix screens. This formulations tool allows a physics-based approach to protein crystallization that may prove useful in structural genomics efforts.

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Year:  2004        PMID: 15452343      PMCID: PMC521965          DOI: 10.1073/pnas.0405847101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  18 in total

1.  Monolithic microfabricated valves and pumps by multilayer soft lithography.

Authors:  M A Unger; H P Chou; T Thorsen; A Scherer; S R Quake
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

Review 2.  Membrane protein structural biology: the high throughput challenge.

Authors:  Patrick J Loll
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

3.  Systematic improvement of protein crystals by determining the supersolubility curves of phase diagrams.

Authors:  Emmanuel Saridakis; Naomi E Chayen
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

4.  Microfluidic large-scale integration.

Authors:  Todd Thorsen; Sebastian J Maerkl; Stephen R Quake
Journal:  Science       Date:  2002-09-26       Impact factor: 47.728

5.  A three-dimensional model of the myoglobin molecule obtained by x-ray analysis.

Authors:  J C KENDREW; G BODO; H M DINTZIS; R G PARRISH; H WYCKOFF; D C PHILLIPS
Journal:  Nature       Date:  1958-03-08       Impact factor: 49.962

6.  Screening of protein crystallization conditions on a microfluidic chip using nanoliter-size droplets.

Authors:  Bo Zheng; L Spencer Roach; Rustem F Ismagilov
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

7.  Screening of nucleation conditions using levitated drops for protein crystallization.

Authors:  Sabina Santesson; Eila S Cedergren-Zeppezauer; Thomas Johansson; Thomas Laurell; Johan Nilsson; Staffan Nilsson
Journal:  Anal Chem       Date:  2003-04-01       Impact factor: 6.986

8.  Structural comparison of two major endo-1,4-xylanases from Trichoderma reesei.

Authors:  A Törrönen; J Rouvinen
Journal:  Biochemistry       Date:  1995-01-24       Impact factor: 3.162

9.  Relative effectiveness of various anions on the solubility of acidic Hypoderma lineatum collagenase at pH 7.2.

Authors:  C Carbonnaux; M Ries-Kautt; A Ducruix
Journal:  Protein Sci       Date:  1995-10       Impact factor: 6.725

10.  Three-dimensional structure of endo-1,4-beta-xylanase II from Trichoderma reesei: two conformational states in the active site.

Authors:  A Törrönen; A Harkki; J Rouvinen
Journal:  EMBO J       Date:  1994-06-01       Impact factor: 11.598

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  42 in total

1.  An integrated microfluidic device for two-dimensional combinatorial dilution.

Authors:  Yun-Ho Jang; Matthew J Hancock; Sang Bok Kim; Šeila Selimović; Woo Young Sim; Hojae Bae; Ali Khademhosseini
Journal:  Lab Chip       Date:  2011-08-11       Impact factor: 6.799

Review 2.  Using nanoliter plugs in microfluidics to facilitate and understand protein crystallization.

Authors:  Bo Zheng; Cory J Gerdts; Rustem F Ismagilov
Journal:  Curr Opin Struct Biol       Date:  2005-10       Impact factor: 6.809

Review 3.  Microfluidic cartridges preloaded with nanoliter plugs of reagents: an alternative to 96-well plates for screening.

Authors:  Delai L Chen; Rustem F Ismagilov
Journal:  Curr Opin Chem Biol       Date:  2006-05-03       Impact factor: 8.822

4.  Phase knowledge enables rational screens for protein crystallization.

Authors:  Megan J Anderson; Carl L Hansen; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

Review 5.  Reactions in droplets in microfluidic channels.

Authors:  Helen Song; Delai L Chen; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-13       Impact factor: 15.336

6.  Design rules for pumping and metering of highly viscous fluids in microfluidics.

Authors:  Sarah L Perry; Jonathan J L Higdon; Paul J A Kenis
Journal:  Lab Chip       Date:  2010-09-27       Impact factor: 6.799

7.  Control and measurement of the phase behavior of aqueous solutions using microfluidics.

Authors:  Jung-Uk Shim; Galder Cristobal; Darren R Link; Todd Thorsen; Yanwei Jia; Katie Piattelli; Seth Fraden
Journal:  J Am Chem Soc       Date:  2007-06-20       Impact factor: 15.419

8.  Engineering challenges for instrumenting and controlling integrated organ-on-chip systems.

Authors:  John P Wikswo; Frank E Block; David E Cliffel; Cody R Goodwin; Christina C Marasco; Dmitry A Markov; David L McLean; John A McLean; Jennifer R McKenzie; Ronald S Reiserer; Philip C Samson; David K Schaffer; Kevin T Seale; Stacy D Sherrod
Journal:  IEEE Trans Biomed Eng       Date:  2013-02-01       Impact factor: 4.538

9.  3D-printed Quake-style microvalves and micropumps.

Authors:  Yuan-Sheng Lee; Nirveek Bhattacharjee; Albert Folch
Journal:  Lab Chip       Date:  2018-04-17       Impact factor: 6.799

10.  Noninvasive metabolic profiling using microfluidics for analysis of single preimplantation embryos.

Authors:  John Paul Urbanski; Mark T Johnson; David D Craig; David L Potter; David K Gardner; Todd Thorsen
Journal:  Anal Chem       Date:  2008-07-29       Impact factor: 6.986

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