Literature DB >> 17245527

Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR.

Jinfa Ying1, Jordan H Chill, John M Louis, Ad Bax.   

Abstract

A new strategy is demonstrated that simultaneously enhances sensitivity and resolution in three- or higher-dimensional heteronuclear multiple quantum NMR experiments. The approach, referred to as mixed-time parallel evolution (MT-PARE), utilizes evolution of chemical shifts of the spins participating in the multiple quantum coherence in parallel, thereby reducing signal losses relative to sequential evolution. The signal in a given PARE dimension, t1, is of a non-decaying constant-time nature for a duration that depends on the length of t2, and vice versa, prior to the onset of conventional exponential decay. Line shape simulations for the 1H-15N PARE indicate that this strategy significantly enhances both sensitivity and resolution in the indirect (1)H dimension, and that the unusual signal decay profile results in acceptable line shapes. Incorporation of the MT-PARE approach into a 3D HMQC-NOESY experiment for measurement of HN-HN NOEs in KcsA in SDS micelles at 50 degrees C was found to increase the experimental sensitivity by a factor of 1.7+/-0.3 with a concomitant resolution increase in the indirectly detected 1H dimension. The method is also demonstrated for a situation in which homonuclear 13C-13C decoupling is required while measuring weak H3'-2'OH NOEs in an RNA oligomer.

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Year:  2007        PMID: 17245527     DOI: 10.1007/s10858-006-9120-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  14 in total

1.  2'-hydroxyl proton positions in helical RNA from simultaneously measured heteronuclear scalar couplings and NOEs.

Authors:  Jinfa Ying; Ad Bax
Journal:  J Am Chem Soc       Date:  2006-07-05       Impact factor: 15.419

2.  NMR study of the tetrameric KcsA potassium channel in detergent micelles.

Authors:  Jordan H Chill; John M Louis; Christopher Miller; Ad Bax
Journal:  Protein Sci       Date:  2006-03-07       Impact factor: 6.725

Review 3.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  A Spin System Labeled and Highly Resolved ed-H(CCO)NH-TOCSY Experiment for the Facilitated Assignment of Proton Side Chains in Partially Deuterated Samples.

Authors:  R M Gschwind; G Gemmecker; H Kessler
Journal:  J Biomol NMR       Date:  1998-02       Impact factor: 2.835

6.  Preparation of 13C and 15N labelled RNAs for heteronuclear multi-dimensional NMR studies.

Authors:  E P Nikonowicz; A Sirr; P Legault; F M Jucker; L M Baer; A Pardi
Journal:  Nucleic Acids Res       Date:  1992-09-11       Impact factor: 16.971

7.  Spin-locked multiple quantum coherence for signal enhancement in heteronuclear multidimensional NMR experiments.

Authors:  S Grzesiek; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  A general method for assigning NMR spectra of denatured proteins using 3D HC(CO)NH-TOCSY triple resonance experiments.

Authors:  T M Logan; E T Olejniczak; R X Xu; S W Fesik
Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

9.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

10.  A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin.

Authors:  M Ikura; L E Kay; A Bax
Journal:  Biochemistry       Date:  1990-05-15       Impact factor: 3.162

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  16 in total

1.  Solution conformation and dynamics of the HIV-1 integrase core domain.

Authors:  Nicholas C Fitzkee; James E Masse; Yang Shen; David R Davies; Ad Bax
Journal:  J Biol Chem       Date:  2010-04-01       Impact factor: 5.157

2.  Projected [(1)H, (15)N]-HMQC-[ (1)H, (1)H]-NOESY for large molecular systems: application to a 121 kDa protein-DNA complex.

Authors:  Veniamin Galius; Chrysoula Leontiou; Timothy Richmond; Gerhard Wider
Journal:  J Biomol NMR       Date:  2008-01-30       Impact factor: 2.835

3.  High-Resolution Diffusion Measurements of Proteins by NMR under Near-Physiological Conditions.

Authors:  Jongchan Lee; Sho Hee Park; Silvia Cavagnero; Jung Ho Lee
Journal:  Anal Chem       Date:  2020-03-20       Impact factor: 6.986

4.  Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities.

Authors:  Jinfa Ying; Jinbu Wang; Alex Grishaev; Ping Yu; Yun-Xing Wang; Ad Bax
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

5.  A Novel MHC-I Surface Targeted for Binding by the MCMV m06 Immunoevasin Revealed by Solution NMR.

Authors:  Nikolaos G Sgourakis; Nathan A May; Lisa F Boyd; Jinfa Ying; Ad Bax; David H Margulies
Journal:  J Biol Chem       Date:  2015-10-13       Impact factor: 5.157

6.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

7.  Measurement of carbonyl chemical shifts of excited protein states by relaxation dispersion NMR spectroscopy: comparison between uniformly and selectively (13)C labeled samples.

Authors:  Patrik Lundström; D Flemming Hansen; Lewis E Kay
Journal:  J Biomol NMR       Date:  2008-09-02       Impact factor: 2.835

8.  Deuterium isotope shifts for backbone ¹H, ¹⁵N and ¹³C nuclei in intrinsically disordered protein α-synuclein.

Authors:  Alexander S Maltsev; Jinfa Ying; Ad Bax
Journal:  J Biomol NMR       Date:  2012-09-08       Impact factor: 2.835

9.  Improved accuracy of 15N-1H scalar and residual dipolar couplings from gradient-enhanced IPAP-HSQC experiments on protonated proteins.

Authors:  Lishan Yao; Jinfa Ying; Ad Bax
Journal:  J Biomol NMR       Date:  2009-02-10       Impact factor: 2.835

10.  Coupled decomposition of four-dimensional NOESY spectra.

Authors:  Sebastian Hiller; Ilghis Ibraghimov; Gerhard Wagner; Vladislav Y Orekhov
Journal:  J Am Chem Soc       Date:  2009-09-16       Impact factor: 15.419

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