Literature DB >> 12628918

Structure of a viral DNA gatekeeper at 10 A resolution by cryo-electron microscopy.

Elena V Orlova1, Brent Gowen, Anja Dröge, Asita Stiege, Frank Weise, Rudi Lurz, Marin van Heel, Paulo Tavares.   

Abstract

In tailed bacteriophages and herpes viruses, the viral DNA is packaged through the portal protein channel. Channel closure is essential to prevent DNA release after packaging. Here we present the connector structure from bacteriophage SPP1 using cryo-electron microscopy and single particle analysis. The multiprotein complex comprises the portal protein gp6 and the head completion proteins gp15 and gp16. Although we show that gp6 in the connector has a fold similar to that of the isolated portal protein, we observe conformational changes in the region of gp6 exposed to the DNA-packaging ATPase and to gp15. This reorganization does not cause closure of the channel. The connector channel traverses the full height of gp6 and gp15, but it is closed by gp16 at the bottom of the complex. Gp16 acts as a valve whose closure prevents DNA leakage, while its opening is required for DNA release upon interaction of the virus with its host.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12628918      PMCID: PMC151052          DOI: 10.1093/emboj/cdg123

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  39 in total

1.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  Shape and DNA packaging activity of bacteriophage SPP1 procapsid: protein components and interactions during assembly.

Authors:  A Dröge; M A Santos; A C Stiege; J C Alonso; R Lurz; T A Trautner; P Tavares
Journal:  J Mol Biol       Date:  2000-02-11       Impact factor: 5.469

Review 3.  Single-particle electron cryo-microscopy: towards atomic resolution.

Authors:  M van Heel; B Gowen; R Matadeen; E V Orlova; R Finn; T Pape; D Cohen; H Stark; R Schmidt; M Schatz; A Patwardhan
Journal:  Q Rev Biophys       Date:  2000-11       Impact factor: 5.318

4.  Structural analysis of the bacteriophage T3 head-to-tail connector.

Authors:  J M Valpuesta; N Sousa; I Barthelemy; J J Fernández; H Fujisawa; B Ibarra; J L Carrascosa
Journal:  J Struct Biol       Date:  2000-08       Impact factor: 2.867

5.  Structural organisation of the head-to-tail interface of a bacterial virus.

Authors:  R Lurz; E V Orlova; D Günther; P Dube; A Dröge; F Weise; M van Heel; P Tavares
Journal:  J Mol Biol       Date:  2001-07-27       Impact factor: 5.469

6.  Bridging the information gap: computational tools for intermediate resolution structure interpretation.

Authors:  W Jiang; M L Baker; S J Ludtke; W Chiu
Journal:  J Mol Biol       Date:  2001-05-18       Impact factor: 5.469

7.  Functional analysis of the terminase large subunit, G2P, of Bacillus subtilis bacteriophage SPP1.

Authors:  A Gual; A G Camacho; J C Alonso
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

Review 8.  A new generation of the IMAGIC image processing system.

Authors:  M van Heel; G Harauz; E V Orlova; R Schmidt; M Schatz
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

Review 9.  No syringes please, ejection of phage T7 DNA from the virion is enzyme driven.

Authors:  I J Molineux
Journal:  Mol Microbiol       Date:  2001-04       Impact factor: 3.501

10.  The UL6 gene product forms the portal for entry of DNA into the herpes simplex virus capsid.

Authors:  W W Newcomb; R M Juhas; D R Thomsen; F L Homa; A D Burch; S K Weller; J C Brown
Journal:  J Virol       Date:  2001-11       Impact factor: 5.103

View more
  63 in total

1.  Molecular architecture of the prolate head of bacteriophage T4.

Authors:  Andrei Fokine; Paul R Chipman; Petr G Leiman; Vadim V Mesyanzhinov; Venigalla B Rao; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-07       Impact factor: 11.205

2.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

3.  Phages have adapted the same protein fold to fulfill multiple functions in virion assembly.

Authors:  Lia Cardarelli; Lisa G Pell; Philipp Neudecker; Nawaz Pirani; Amanda Liu; Lindsay A Baker; John L Rubinstein; Karen L Maxwell; Alan R Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-26       Impact factor: 11.205

4.  Crystallization of the nonameric small terminase subunit of bacteriophage P22.

Authors:  Ankoor Roy; Anshul Bhardwaj; Gino Cingolani
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-12-23

Review 5.  Biological Nanomotors with a Revolution, Linear, or Rotation Motion Mechanism.

Authors:  Peixuan Guo; Hiroyuki Noji; Christopher M Yengo; Zhengyi Zhao; Ian Grainge
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-27       Impact factor: 11.056

6.  Maturation of phage T7 involves structural modification of both shell and inner core components.

Authors:  Xabier Agirrezabala; Jaime Martín-Benito; José R Castón; Roberto Miranda; José María Valpuesta; José L Carrascosa
Journal:  EMBO J       Date:  2005-10-06       Impact factor: 11.598

7.  Identification of a region in the herpes simplex virus scaffolding protein required for interaction with the portal.

Authors:  Gregory P Singer; William W Newcomb; Darrel R Thomsen; Fred L Homa; Jay C Brown
Journal:  J Virol       Date:  2005-01       Impact factor: 5.103

Review 8.  Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity.

Authors:  Alasdair C Steven; J Bernard Heymann; Naiqian Cheng; Benes L Trus; James F Conway
Journal:  Curr Opin Struct Biol       Date:  2005-04       Impact factor: 6.809

9.  Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.

Authors:  Andrei Fokine; Petr G Leiman; Mikhail M Shneider; Bijan Ahvazi; Karen M Boeshans; Alasdair C Steven; Lindsay W Black; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-06       Impact factor: 11.205

10.  Oriented single directional insertion of nanochannel of bacteriophage SPP1 DNA packaging motor into lipid bilayer via polar hydrophobicity.

Authors:  Zhi Zhou; Zhouxiang Ji; Shaoying Wang; Farzin Haque; Peixuan Guo
Journal:  Biomaterials       Date:  2016-08-04       Impact factor: 12.479

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.