Literature DB >> 12603112

Elimination of 13Calpha splitting in protein NMR spectra by deconvolution with maximum entropy reconstruction.

Nobuhisa Shimba1, Alan S Stern, Charles S Craik, Jeffrey C Hoch, Volker Dötsch.   

Abstract

Homonuclear 13C-13C couplings can significantly reduce the sensitivity and resolution of multidimensional NMR experiments. The most important of these couplings is the 13Calpha-13Cbeta coupling, and several different methods have been developed to eliminate its effect from spectra used for backbone assignment, including short or constant-time evolution periods, selectively labeled amino acids, and multiple-band decoupling sequences. In this communication we show that postacquisition deconvolution of the spectra with a maximum entropy algorithm can be superior to experimental decoupling. The method is very robust, does not introduce shifts of the resonance positions, and simplifies the measurement of the most important NMR experiments for protein backbone assignment.

Entities:  

Mesh:

Substances:

Year:  2003        PMID: 12603112     DOI: 10.1021/ja027973e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  22 in total

1.  Alternate 13C-12C labeling for complete mainchain resonance assignments using C alpha direct-detection with applicability toward fast relaxing protein systems.

Authors:  Koh Takeuchi; Zhen-Yu J Sun; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2008-12-24       Impact factor: 15.419

2.  CONNJUR Workflow Builder: a software integration environment for spectral reconstruction.

Authors:  Matthew Fenwick; Gerard Weatherby; Jay Vyas; Colbert Sesanker; Timothy O Martyn; Heidi J C Ellis; Michael R Gryk
Journal:  J Biomol NMR       Date:  2015-06-12       Impact factor: 2.835

Review 3.  Biomolecular NMR data analysis.

Authors:  Michael R Gryk; Jay Vyas; Mark W Maciejewski
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05       Impact factor: 9.795

4.  Selective 13C labeling of nucleotides for large RNA NMR spectroscopy using an E. coli strain disabled in the TCA cycle.

Authors:  Chandar S Thakur; Jacob N Sama; Melantha E Jackson; Bin Chen; T Kwaku Dayie
Journal:  J Biomol NMR       Date:  2010-11-06       Impact factor: 2.835

5.  CACA-TOCSY with alternate 13C-12C labeling: a 13Calpha direct detection experiment for mainchain resonance assignment, dihedral angle information, and amino acid type identification.

Authors:  Koh Takeuchi; Dominique P Frueh; Zhen-Yu J Sun; Sebastian Hiller; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-04-10       Impact factor: 2.835

6.  Deuteration of nonexchangeable protons on proteins affects their thermal stability, side-chain dynamics, and hydrophobicity.

Authors:  Parker J Nichols; Isaac Falconer; Aaron Griffin; Colin Mant; Robert Hodges; Christopher J McKnight; Beat Vögeli; Liliya Vugmeyster
Journal:  Protein Sci       Date:  2020-05-26       Impact factor: 6.725

7.  13C-direct detected NMR experiments for the sequential J-based resonance assignment of RNA oligonucleotides.

Authors:  Christian Richter; Helena Kovacs; Janina Buck; Anna Wacker; Boris Fürtig; Wolfgang Bermel; Harald Schwalbe
Journal:  J Biomol NMR       Date:  2010-06-11       Impact factor: 2.835

Review 8.  Perspectives in magnetic resonance: NMR in the post-FFT era.

Authors:  Sven G Hyberts; Haribabu Arthanari; Scott A Robson; Gerhard Wagner
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

9.  High-resolution homonuclear 2D NMR of carbon-13 enriched metabolites and their mixtures.

Authors:  Fengli Zhang; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Magn Reson       Date:  2012-09-24       Impact factor: 2.229

10.  FM reconstruction of non-uniformly sampled protein NMR data at higher dimensions and optimization by distillation.

Authors:  Sven G Hyberts; Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2009-08-25       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.