Literature DB >> 12591999

Uridine insertion/deletion RNA editing in trypanosome mitochondria: a complex business.

Larry Simpson1, Sandro Sbicego, Ruslan Aphasizhev.   

Abstract

The basic mechanism of uridine insertion/deletion RNA editing in mitochondria of kinetoplastid protists has been established for some time but the molecular details remained largely unknown. Recently, there has been significant progress in defining the molecular components of the editing reaction. A number of factors have been isolated from trypanosome mitochondria, some of which have been definitely implicated in the uridine insertion/deletion RNA editing reaction and others of which have been circumstantially implicated. Several protein complexes have been isolated which exhibit some editing activities, and the macromolecular organization of these complexes is being analyzed. In addition, there have been several important technical advances in the in vitro analysis of editing. In this review we critically examine the various factors and complexes proposed to be involved in RNA editing.

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Year:  2003        PMID: 12591999      PMCID: PMC1370392          DOI: 10.1261/rna.2178403

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  73 in total

1.  A cis-acting A-U sequence element induces kinetoplastid U-insertions.

Authors:  L M Brown; B J Burbach; B A McKenzie; G J Connell
Journal:  J Biol Chem       Date:  1999-03-05       Impact factor: 5.157

2.  The involvement of gRNA-binding protein gBP21 in RNA editing-an in vitro and in vivo analysis.

Authors:  L Lambert; U F Müller; A E Souza; H U Göringer
Journal:  Nucleic Acids Res       Date:  1999-03-15       Impact factor: 16.971

3.  The RNA Modification Database: 1999 update.

Authors:  J Rozenski; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

Review 4.  Birth of the snoRNPs: the evolution of the modification-guide snoRNAs.

Authors:  D L Lafontaine; D Tollervey
Journal:  Trends Biochem Sci       Date:  1998-10       Impact factor: 13.807

5.  Association of guide RNA binding protein gBP21 with active RNA editing complexes in Trypanosoma brucei.

Authors:  T E Allen; S Heidmann; R Reed; P J Myler; H U Göringer; K D Stuart
Journal:  Mol Cell Biol       Date:  1998-10       Impact factor: 4.272

Review 6.  Gene regulation by Y-box proteins: coupling control of transcription and translation.

Authors:  K Matsumoto; A P Wolffe
Journal:  Trends Cell Biol       Date:  1998-08       Impact factor: 20.808

7.  Trypanosoma brucei TBRGG1, a mitochondrial oligo(U)-binding protein that co-localizes with an in vitro RNA editing activity.

Authors:  L Vanhamme; D Perez-Morga; C Marchal; D Speijer; L Lambert; M Geuskens; S Alexandre; N Ismaïli; U Göringer; R Benne; E Pays
Journal:  J Biol Chem       Date:  1998-08-21       Impact factor: 5.157

8.  Purification and characterization of MAR1. A mitochondrial associated ribonuclease from Leishmania tarentolae.

Authors:  J D Alfonzo; O H Thiemann; L Simpson
Journal:  J Biol Chem       Date:  1998-11-06       Impact factor: 5.157

9.  Kinetoplastid RNA-editing-associated protein 1 (REAP-1): a novel editing complex protein with repetitive domains.

Authors:  S Madison-Antenucci; R S Sabatini; V W Pollard; S L Hajduk
Journal:  EMBO J       Date:  1998-11-02       Impact factor: 11.598

10.  Different Trypanosoma brucei guide RNA molecules associate with an identical complement of mitochondrial proteins in vitro.

Authors:  J Köller; G Nörskau; A S Paul; K Stuart; H U Göringer
Journal:  Nucleic Acids Res       Date:  1994-06-11       Impact factor: 16.971

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  73 in total

Review 1.  Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing.

Authors:  Larry Simpson; Ruslan Aphasizhev; Guanghan Gao; Xuedong Kang
Journal:  RNA       Date:  2004-02       Impact factor: 4.942

2.  Two distinct roles for terminal uridylyl transferases in RNA editing.

Authors:  Jonatha M Gott
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-08       Impact factor: 11.205

3.  Nonreplicative homologous RNA recombination: promiscuous joining of RNA pieces?

Authors:  Anatoly P Gmyl; Sergey A Korshenko; Evegny V Belousov; Elena V Khitrina; Vadim I Agol
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

4.  Portability and fidelity of RNA-repair systems.

Authors:  Beate Schwer; Rana Sawaya; C Kiong Ho; Stewart Shuman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-18       Impact factor: 11.205

5.  Probing the substrate specificity of the bacterial Pnkp/Hen1 RNA repair system using synthetic RNAs.

Authors:  Can Zhang; Chio Mui Chan; Pei Wang; Raven H Huang
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

6.  In Trypanosoma brucei RNA editing, band II enables recognition specifically at each step of the U insertion cycle.

Authors:  Julie A Law; Catherine E Huang; Sean F O'Hearn; Barbara Sollner-Webb
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

7.  Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei.

Authors:  Junpeng Deng; Nancy Lewis Ernst; Stewart Turley; Kenneth D Stuart; Wim G J Hol
Journal:  EMBO J       Date:  2005-11-10       Impact factor: 11.598

Review 8.  Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Authors:  Julius Lukes; Hassan Hashimi; Alena Zíková
Journal:  Curr Genet       Date:  2005-11-04       Impact factor: 3.886

9.  A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification.

Authors:  Xue-Hai Liang; Shai Uliel; Avraham Hury; Sarit Barth; Tirza Doniger; Ron Unger; Shulamit Michaeli
Journal:  RNA       Date:  2005-05       Impact factor: 4.942

10.  Genome annotation in the presence of insertional RNA editing.

Authors:  Christina Beargie; Tsunglin Liu; Mark Corriveau; Ha Youn Lee; Jonatha Gott; Ralf Bundschuh
Journal:  Bioinformatics       Date:  2008-09-25       Impact factor: 6.937

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