Literature DB >> 16215758

Unexplained complexity of the mitochondrial genome and transcriptome in kinetoplastid flagellates.

Julius Lukes1, Hassan Hashimi, Alena Zíková.   

Abstract

Kinetoplastids are flagellated protozoans, whose members include the pathogens Trypanosoma brucei, T. cruzi and Leishmania species, that are considered among the earliest diverging eukaryotes with a mitochondrion. This organelle has become famous because of its many unusual properties, which are unique to the order Kinetoplastida, including an extensive kinetoplast DNA network and U-insertion/deletion type RNA editing of its mitochondrial transcripts. In the last decade, considerable progress has been made in elucidating the complex machinery of RNA editing. Moreover, our understanding of the structure and replication of kinetoplast DNA has also dramatically improved. Much less however, is known, about the developmental regulation of RNA editing, its integration with other RNA maturation processes, stability of mitochondrial mRNAs, or evolution of the editing process itself. Yet the profusion of genomic data recently made available by sequencing consortia, in combination with methods of reverse genetics, hold promise in understanding the complexity of this exciting organelle, knowledge of which may enable us to fight these often medically important protozoans.

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Year:  2005        PMID: 16215758     DOI: 10.1007/s00294-005-0027-0

Source DB:  PubMed          Journal:  Curr Genet        ISSN: 0172-8083            Impact factor:   3.886


  227 in total

1.  Formation of guide RNA/messenger RNA chimeric molecules in vitro, the initial step of RNA editing, is dependent on an anchor sequence.

Authors:  B Blum; L Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  1992-12-15       Impact factor: 11.205

2.  RNA ligase and its involvement in guide RNA/mRNA chimera formation. Evidence for a cleavage-ligation mechanism of Trypanosoma brucei mRNA editing.

Authors:  R Sabatini; S L Hajduk
Journal:  J Biol Chem       Date:  1995-03-31       Impact factor: 5.157

3.  Complexes from Trypanosoma brucei that exhibit deletion editing and other editing-associated properties.

Authors:  R A Corell; L K Read; G R Riley; J K Nellissery; T E Allen; M L Kable; M D Wachal; S D Seiwert; P J Myler; K D Stuart
Journal:  Mol Cell Biol       Date:  1996-04       Impact factor: 4.272

Review 4.  The structure and replication of kinetoplast DNA.

Authors:  T A Shapiro; P T Englund
Journal:  Annu Rev Microbiol       Date:  1995       Impact factor: 15.500

5.  Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: structure probing of an mRNA bound to its cognate gRNA.

Authors:  S S Leung; D J Koslowsky
Journal:  RNA       Date:  2001-12       Impact factor: 4.942

6.  tRNAs in Trypanosoma brucei: genomic organization, expression, and mitochondrial import.

Authors:  Timothy H P Tan; Roland Pach; Anne Crausaz; Al Ivens; André Schneider
Journal:  Mol Cell Biol       Date:  2002-06       Impact factor: 4.272

7.  Identification and molecular characterization of two novel Trypanosoma cruzi genes encoding polypeptides sharing sequence motifs found in proteins involved in RNA editing reactions.

Authors:  A Ouaissi; B Vergnes; M Borges; E Guilvard
Journal:  Gene       Date:  2000-08-08       Impact factor: 3.688

8.  Trypanosoma brucei has two distinct mitochondrial DNA polymerase beta enzymes.

Authors:  Tina T Saxowsky; Gunjan Choudhary; Michele M Klingbeil; Paul T Englund
Journal:  J Biol Chem       Date:  2003-09-08       Impact factor: 5.157

Review 9.  Natural and induced dyskinetoplastic trypanosomatids: how to live without mitochondrial DNA.

Authors:  Achim Schnaufer; Gonzalo J Domingo; Ken Stuart
Journal:  Int J Parasitol       Date:  2002-08       Impact factor: 3.981

10.  A tale of two TUTases.

Authors:  Ruslan Aphasizhev; Inna Aphasizheva; Larry Simpson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-03       Impact factor: 11.205

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  96 in total

1.  Protein translocase of mitochondrial inner membrane in Trypanosoma brucei.

Authors:  Ujjal K Singha; Vanae Hamilton; Melanie R Duncan; Ebony Weems; Manish K Tripathi; Minu Chaudhuri
Journal:  J Biol Chem       Date:  2012-03-09       Impact factor: 5.157

2.  Interactions of a replication initiator with histone H1-like proteins remodel the condensed mitochondrial genome.

Authors:  Irit Kapeller; Neta Milman; Nurit Yaffe; Joseph Shlomai
Journal:  J Biol Chem       Date:  2011-10-08       Impact factor: 5.157

3.  TbRGG2 facilitates kinetoplastid RNA editing initiation and progression past intrinsic pause sites.

Authors:  Michelle L Ammerman; Vladimir Presnyak; John C Fisk; Bardees M Foda; Laurie K Read
Journal:  RNA       Date:  2010-09-20       Impact factor: 4.942

4.  OB-fold domain of KREPA4 mediates high-affinity interaction with guide RNA and possesses annealing activity.

Authors:  Smriti Kala; Reza Salavati
Journal:  RNA       Date:  2010-08-16       Impact factor: 4.942

Review 5.  Autophagy in protists.

Authors:  Michael Duszenko; Michael L Ginger; Ana Brennand; Melisa Gualdrón-López; María Isabel Colombo; Graham H Coombs; Isabelle Coppens; Bamini Jayabalasingham; Gordon Langsley; Solange Lisboa de Castro; Rubem Menna-Barreto; Jeremy C Mottram; Miguel Navarro; Daniel J Rigden; Patricia S Romano; Veronika Stoka; Boris Turk; Paul A M Michels
Journal:  Autophagy       Date:  2011-02-01       Impact factor: 16.016

6.  An Aromatic Diamidine That Targets Kinetoplast DNA, Impairs the Cell Cycle in Trypanosoma cruzi, and Diminishes Trypomastigote Release from Infected Mammalian Host Cells.

Authors:  Richard M B M Girard; Marcell Crispim; Ivana Stolić; Flávia Silva Damasceno; Marcelo Santos da Silva; Eizabeth Mieko Furusho Pral; Maria Carolina Elias; Miroslav Bajić; Ariel Mariano Silber
Journal:  Antimicrob Agents Chemother       Date:  2016-09-23       Impact factor: 5.191

7.  Scanning and three-dimensional electron microscopy methods for the study of Trypanosoma brucei and Leishmania mexicana flagella.

Authors:  Eva Gluenz; Richard John Wheeler; Louise Hughes; Sue Vaughan
Journal:  Methods Cell Biol       Date:  2015-03-07       Impact factor: 1.441

8.  Role of p38 in replication of Trypanosoma brucei kinetoplast DNA.

Authors:  Beiyu Liu; Henrik Molina; Dario Kalume; Akhilesh Pandey; Jack D Griffith; Paul T Englund
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

9.  An arginine-glycine-rich RNA binding protein impacts the abundance of specific mRNAs in the mitochondria of Trypanosoma brucei.

Authors:  Natalie M McAdams; Michelle L Ammerman; Julee Nanduri; Kaylen Lott; John C Fisk; Laurie K Read
Journal:  Eukaryot Cell       Date:  2014-12-05

10.  Mitochondrial outer membrane proteome of Trypanosoma brucei reveals novel factors required to maintain mitochondrial morphology.

Authors:  Moritz Niemann; Sebastian Wiese; Jan Mani; Astrid Chanfon; Christopher Jackson; Chris Meisinger; Bettina Warscheid; André Schneider
Journal:  Mol Cell Proteomics       Date:  2012-12-06       Impact factor: 5.911

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