Literature DB >> 12591960

Proteins with H-bond packing defects are highly interactive with lipid bilayers: Implications for amyloidogenesis.

Ariel Fernández1, R Stephen Berry.   

Abstract

We noticed that disease-related amyloidogenic proteins and especially cellular prion proteins have the highest proportion of incompletely desolvated backbone H bonds among soluble proteins. Such bonds are vulnerable to water attack and thus represent structural weaknesses. We have measured the adsorption of proteins onto phospholipid bilayers and found a strong correlation between the extent of underwrapping of backbone H bonds in the native structure of a protein and its extent of deposition on the bilayer: the less the H bond wrapping, the higher the propensity for protein-bilayer binding. These observations support the proposition that soluble proteins with amyloidogenic propensity and membrane proteins share a pervasive building motif: the underwrapped H bonds. Whereas in membrane proteins, this motif does not signal a structural vulnerability, in soluble proteins, it is responsible for their reactivity.

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Year:  2003        PMID: 12591960      PMCID: PMC151351          DOI: 10.1073/pnas.0335642100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

Review 1.  Protein misfolding, evolution and disease.

Authors:  C M Dobson
Journal:  Trends Biochem Sci       Date:  1999-09       Impact factor: 13.807

2.  Characterization of the structure and dynamics of amyloidogenic variants of human lysozyme by NMR spectroscopy.

Authors:  A K Chamberlain; V Receveur; A Spencer; C Redfield; C M Dobson
Journal:  Protein Sci       Date:  2001-12       Impact factor: 6.725

3.  Effect of association state and conformational stability on the kinetics of immunoglobulin light chain amyloid fibril formation at physiological pH.

Authors:  Pierre O Souillac; Vladimir N Uversky; Ian S Millett; Ritu Khurana; Sebastian Doniach; Anthony L Fink
Journal:  J Biol Chem       Date:  2002-01-28       Impact factor: 5.157

4.  Protein folding: is hierarchical versus nonhierarchical a productive issue?

Authors:  Ariel Fernández
Journal:  J Biomol Struct Dyn       Date:  2002-04

5.  The solution structure of human beta2-microglobulin reveals the prodromes of its amyloid transition.

Authors:  Giuliana Verdone; Alessandra Corazza; Paolo Viglino; Fabio Pettirossi; Sofia Giorgetti; Palma Mangione; Alessia Andreola; Monica Stoppini; Vittorio Bellotti; Gennaro Esposito
Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

6.  Distinguishing between two-state and three-state models for ubiquitin folding.

Authors:  B A Krantz; T R Sosnick
Journal:  Biochemistry       Date:  2000-09-26       Impact factor: 3.162

7.  NMR solution structure of the human prion protein.

Authors:  R Zahn; A Liu; T Lührs; R Riek; C von Schroetter; F López García; M Billeter; L Calzolai; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-04       Impact factor: 11.205

8.  Pore formation by beta-2-microglobulin: a mechanism for the pathogenesis of dialysis associated amyloidosis.

Authors:  Y Hirakura; B L Kagan
Journal:  Amyloid       Date:  2001-06       Impact factor: 7.141

9.  Physical reasons for the unusual alpha-helix stabilization afforded by charged or neutral polar residues in alanine-rich peptides.

Authors:  J A Vila; D R Ripoll; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2000-11-21       Impact factor: 11.205

10.  Structural properties of an amyloid precursor of beta(2)-microglobulin.

Authors:  Victoria J McParland; Arnout P Kalverda; Steve W Homans; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2002-05
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  14 in total

1.  Structural defects and the diagnosis of amyloidogenic propensity.

Authors:  Ariel Fernández; József Kardos; L Ridgway Scott; Yuji Goto; R Stephen Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-12       Impact factor: 11.205

2.  The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks.

Authors:  Ariel Fernández; Ridgway Scott; R Stephen Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-20       Impact factor: 11.205

3.  Packing defects as selectivity switches for drug-based protein inhibitors.

Authors:  Ariel Fernández; Ridgway Scott; R Stephen Berry
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-30       Impact factor: 11.205

4.  Water's role in the force-induced unfolding of ubiquitin.

Authors:  Jingyuan Li; Julio M Fernandez; B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

5.  Passive water-lipid peptide translocators with conformational switches: from single-molecule probe to cellular assay.

Authors:  Ariel Fernández; Alejandro Crespo; Axel Blau
Journal:  J Phys Chem B       Date:  2007-11-29       Impact factor: 2.991

Review 6.  Kinase packing defects as drug targets.

Authors:  Alejandro Crespo; Ariel Fernández
Journal:  Drug Discov Today       Date:  2007-10-30       Impact factor: 7.851

Review 7.  How is protein aggregation in amyloidogenic diseases modulated by biological membranes?

Authors:  Christopher Aisenbrey; Tomasz Borowik; Roberth Byström; Marcus Bokvist; Fredrick Lindström; Hanna Misiak; Marc-Antoine Sani; Gerhard Gröbner
Journal:  Eur Biophys J       Date:  2007-11-21       Impact factor: 1.733

Review 8.  Antimicrobial properties of amyloid peptides.

Authors:  Bruce L Kagan; Hyunbum Jang; Ricardo Capone; Fernando Teran Arce; Srinivasan Ramachandran; Ratnesh Lal; Ruth Nussinov
Journal:  Mol Pharm       Date:  2011-11-29       Impact factor: 4.939

9.  Binding of lysozyme to phospholipid bilayers: evidence for protein aggregation upon membrane association.

Authors:  Galyna P Gorbenko; Valeriya M Ioffe; Paavo K J Kinnunen
Journal:  Biophys J       Date:  2007-04-13       Impact factor: 4.033

10.  Inhibitor design by wrapping packing defects in HIV-1 proteins.

Authors:  Ariel Fernández; Kristina Rogale; Ridgway Scott; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-02       Impact factor: 11.205

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