Literature DB >> 12589440

Chromosomal mapping of Brassica oleracea based on ESTs from Arabidopsis thaliana: complexity of the comparative map.

D Babula1, M Kaczmarek, A Barakat, M Delseny, C F Quiros, J Sadowski.   

Abstract

Expressed sequence tags (ESTs) from the Arabidopsis thaliana sequencing project were used to construct a genetic RFLP map for Brassica oleracea. Of the 110 A. thaliana ESTs tested, 95 were found to be informative RFLP probes in map construction. In total, 212 new loci corresponding to the 95 ESTs were added to the existing genetic map of B. oleracea. The enriched map covers all nine basic linkage groups and confirms that the chromosomes of B. oleracea and A. thaliana are similar in linear organization. However, varying levels of sequence conservation between the chromosomes of B. oleracea and A. thaliana were detected in different regions of the genomes. Long conserved regions encompassing entire chromosome arms in both genomes were identified; these are probably shared by descent. On the other hand, extensive rearrangements were observed in numerous chromosome regions, producing a mosaic of A. thaliana-like segments in the genome of Brassica. The presence of extensive chromosome duplication in A. thaliana was taken into consideration in the construction of the comparative maps of B. oleracea and A. thaliana.

Entities:  

Mesh:

Year:  2003        PMID: 12589440     DOI: 10.1007/s00438-002-0782-2

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  34 in total

Review 1.  Synteny: recent advances and future prospects.

Authors:  R Schmidt
Journal:  Curr Opin Plant Biol       Date:  2000-04       Impact factor: 7.834

2.  A chromosome-based model for estimating the number of conserved segments between pairs of species from comparative genetic maps.

Authors:  D Waddington; A J Springbett; D W Burt
Journal:  Genetics       Date:  2000-01       Impact factor: 4.562

3.  Simple and efficient system for synthesis of non-radioactive nucleic acid hybridization probes using PCR.

Authors:  J R Emanuel
Journal:  Nucleic Acids Res       Date:  1991-05-25       Impact factor: 16.971

4.  Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution.

Authors:  K Song; P Lu; K Tang; T C Osborn
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-15       Impact factor: 11.205

5.  Plant comparative genetics after 10 years.

Authors:  M D Gale; K M Devos
Journal:  Science       Date:  1998-10-23       Impact factor: 47.728

6.  Arabidopsis and Brassica comparative genomics: sequence, structure and gene content in the ABI-Rps2-Ck1 chromosomal segment and related regions.

Authors:  C F Quiros; F Grellet; J Sadowski; T Suzuki; G Li; T Wroblewski
Journal:  Genetics       Date:  2001-03       Impact factor: 4.562

7.  Contrasting genome organisation: two regions of the Brassica oleracea genome compared with collinear regions of the Arabidopsis thaliana genome.

Authors:  C D Ryder; L B Smith; G R Teakle; G J King
Journal:  Genome       Date:  2001-10       Impact factor: 2.166

8.  A functional S locus anther gene is not required for the self-incompatibility response in Brassica oleracea.

Authors:  M Pastuglia; V Ruffio-Châble; V Delorme; T Gaude; C Dumas; J M Cock
Journal:  Plant Cell       Date:  1997-11       Impact factor: 11.277

9.  Map-based cloning of a gene controlling omega-3 fatty acid desaturation in Arabidopsis.

Authors:  V Arondel; B Lemieux; I Hwang; S Gibson; H M Goodman; C R Somerville
Journal:  Science       Date:  1992-11-20       Impact factor: 47.728

10.  Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization.

Authors:  S P Kowalski; T H Lan; K A Feldmann; A H Paterson
Journal:  Genetics       Date:  1994-10       Impact factor: 4.562

View more
  36 in total

1.  Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa.

Authors:  Tae-Jin Yang; Jung Sun Kim; Soo-Jin Kwon; Ki-Byung Lim; Beom-Soon Choi; Jin-A Kim; Mina Jin; Jee Young Park; Myung-Ho Lim; Ho-Il Kim; Yong Pyo Lim; Jason Jongho Kang; Jin-Han Hong; Chang-Bae Kim; Jong Bhak; Ian Bancroft; Beom-Seok Park
Journal:  Plant Cell       Date:  2006-04-21       Impact factor: 11.277

2.  Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.

Authors:  Christopher D Town; Foo Cheung; Rama Maiti; Jonathan Crabtree; Brian J Haas; Jennifer R Wortman; Erin E Hine; Ryan Althoff; Tamara S Arbogast; Luke J Tallon; Marielle Vigouroux; Martin Trick; Ian Bancroft
Journal:  Plant Cell       Date:  2006-04-21       Impact factor: 11.277

3.  The genomic organization of retrotransposons in Brassica oleracea.

Authors:  Karine Alix; Carol D Ryder; Jay Moore; Graham J King; J S Pat Heslop-Harrison
Journal:  Plant Mol Biol       Date:  2005-12       Impact factor: 4.076

4.  Characterization of terminal-repeat retrotransposon in miniature (TRIM) in Brassica relatives.

Authors:  Tae-Jin Yang; Soo-Jin Kwon; Beom-Soon Choi; Jung Sun Kim; Mina Jin; Ki-Byung Lim; Jee Young Park; Jin-A Kim; Myung-Ho Lim; Ho-Il Kim; Hyo-Jin Lee; Yong Pyo Lim; Andrew H Paterson; Beom-Seok Park
Journal:  Theor Appl Genet       Date:  2006-12-09       Impact factor: 5.699

5.  A new recombined double low restorer line for the Ogu-INRA cms in rapeseed (Brassica napus L.).

Authors:  C Primard-Brisset; J P Poupard; R Horvais; F Eber; G Pelletier; M Renard; R Delourme
Journal:  Theor Appl Genet       Date:  2005-06-18       Impact factor: 5.699

6.  Simple sequence repeat-based comparative genomics between Brassica rapa and Arabidopsis thaliana: the genetic origin of clubroot resistance.

Authors:  Keita Suwabe; Hikaru Tsukazaki; Hiroyuki Iketani; Katsunori Hatakeyama; Masatoshi Kondo; Miyuki Fujimura; Tsukasa Nunome; Hiroyuki Fukuoka; Masashi Hirai; Satoru Matsumoto
Journal:  Genetics       Date:  2006-05       Impact factor: 4.562

7.  Comparative analysis of methylthioalkylmalate synthase (MAM) gene family and flanking DNA sequences in Brassica oleracea and Arabidopsis thaliana.

Authors:  Muqiang Gao; Genyi Li; Daniel Potter; W Richard McCombie; Carlos F Quiros
Journal:  Plant Cell Rep       Date:  2006-01-24       Impact factor: 4.570

8.  Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

Authors:  Feng Cheng; Terezie Mandáková; Jian Wu; Qi Xie; Martin A Lysak; Xiaowu Wang
Journal:  Plant Cell       Date:  2013-05-07       Impact factor: 11.277

9.  Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence.

Authors:  Foo Cheung; Martin Trick; Nizar Drou; Yong Pyo Lim; Jee-Young Park; Soo-Jin Kwon; Jin-A Kim; Rod Scott; J Chris Pires; Andrew H Paterson; Chris Town; Ian Bancroft
Journal:  Plant Cell       Date:  2009-07-14       Impact factor: 11.277

10.  Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.

Authors:  Piotr A Ziolkowski; Grzegorz Koczyk; Lukasz Galganski; Jan Sadowski
Journal:  Nucleic Acids Res       Date:  2009-03-21       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.