Literature DB >> 10712952

Synteny: recent advances and future prospects.

R Schmidt1.   

Abstract

Their small sizes have meant that the Arabidopsis and rice genomes are the best-studied of all plant genomes. Although even closely related plant species can show large variations in genome size, extensive genome colinearity has been established at the genetic level and recently also at the gene level. This allows the transfer of information and resources assembled for rice and Arabidopsis to be used in the genome analysis of many other plants.

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Year:  2000        PMID: 10712952     DOI: 10.1016/s1369-5266(99)00048-5

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  22 in total

1.  Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.

Authors:  M Rossberg; K Theres; A Acarkan; R Herrero; T Schmitt; K Schumacher; G Schmitz; R Schmidt
Journal:  Plant Cell       Date:  2001-04       Impact factor: 11.277

2.  Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order.

Authors:  H Liu; R Sachidanandam; L Stein
Journal:  Genome Res       Date:  2001-12       Impact factor: 9.043

Review 3.  Through a genome, darkly: comparative analysis of plant chromosomal DNA.

Authors:  Graham J King
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

Review 4.  Plant genome evolution: lessons from comparative genomics at the DNA level.

Authors:  Renate Schmidt
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

5.  AtREM1, a member of a new family of B3 domain-containing genes, is preferentially expressed in reproductive meristems.

Authors:  José M Franco-Zorrilla; Pilar Cubas; José A Jarillo; Begoña Fernández-Calvín; Julio Salinas; José M Martínez-Zapater
Journal:  Plant Physiol       Date:  2002-02       Impact factor: 8.340

6.  The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.

Authors:  Klaas Vandepoele; Yvan Saeys; Cedric Simillion; Jeroen Raes; Yves Van De Peer
Journal:  Genome Res       Date:  2002-11       Impact factor: 9.043

7.  Comparative mapping between quercus and castanea using simple-sequence repeats (SSRs).

Authors:  T Barreneche; M Casasoli; K Russell; A Akkak; H Meddour; C Plomion; F Villani; A Kremer
Journal:  Theor Appl Genet       Date:  2003-10-16       Impact factor: 5.699

8.  Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat.

Authors:  Xiu-Ying Kong; Yong Qiang Gu; Frank M You; Jorge Dubcovsky; Olin D Anderson
Journal:  Plant Mol Biol       Date:  2004-01       Impact factor: 4.076

9.  Microsynteny between pea and Medicago truncatula in the SYM2 region.

Authors:  Gustavo Gualtieri; Olga Kulikova; Erik Limpens; Dong-Jin Kim; Douglas R Cook; Ton Bisselin; René Geurts
Journal:  Plant Mol Biol       Date:  2002-09       Impact factor: 4.076

Review 10.  Structural and functional analysis of rice genome.

Authors:  Akhilesh K Tyagi; Jitendra P Khurana; Paramjit Khurana; Saurabh Raghuvanshi; Anumapa Gaur; Anita Kapur; Vikrant Gupta; Dibyendu Kumar; V Ravi; Shubha Vij; Parul Khurana; Sulabha Sharma
Journal:  J Genet       Date:  2004-04       Impact factor: 1.166

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