Literature DB >> 12568603

Characterization of (1)H-(1)H distances in a uniformly (2)H,(15)N-labeled SH3 domain by MAS solid-state NMR spectroscopy (section sign).

Bernd Reif1, Barth J Van Rossum, Federica Castellani, Kristina Rehbein, Anne Diehl, Hartmut Oschkinat.   

Abstract

In this communication, we demonstrate the feasibility of obtaining long-range (1)H-(1)H distance information by MAS solid-state NMR for a microcrystalline, uniformly (2)H,(15)N-labeled sample of a SH3 domain of chicken alpha-spectrin. The experiments yield NOESY-type spectra and rely on the favorable dispersion of the (15)N chemical shifts of the protein backbone. Perdeuteration of nonexchangeable sites is employed to simplify proton spin systems and to obtain multiple structural information. Two mixing schemes, (1)H-(1)H double quantum filtered Post-C7 and (1)H spin diffusion, are implemented to obtain quantitative (1)H-(1)H distance information. Post-C7 and spin diffusion cross-peak buildup rates are discussed for initial-rate fitting and in the framework of n = 0 rotational resonance (rotor driven spin diffusion), respectively. Different deuteration schemes were tested to find conditions where short-range (1)H-(1)H interactions are truncated (e.g., between H(N) and H(alpha)), but long-range interactions are retained (e.g., between H(N) and H(N)).

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Year:  2003        PMID: 12568603     DOI: 10.1021/ja0283697

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  RFDR with adiabatic inversion pulses: application to internuclear distance measurements.

Authors:  Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2004-03       Impact factor: 2.835

Review 2.  Structure determination of membrane proteins by NMR spectroscopy.

Authors:  Stanley J Opella; Francesca M Marassi
Journal:  Chem Rev       Date:  2004-08       Impact factor: 60.622

3.  Assignment strategies for aliphatic protons in the solid-state in randomly protonated proteins.

Authors:  Sam Asami; Bernd Reif
Journal:  J Biomol NMR       Date:  2011-12-04       Impact factor: 2.835

4.  Characterisation of hydrogen bonding networks in RNAs via magic angle spinning solid state NMR spectroscopy.

Authors:  Kerstin Riedel; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

5.  Homonuclear mixing sequences for perdeuterated proteins.

Authors:  Kuo-Ying Huang; Ansgar B Siemer; Ann E McDermott
Journal:  J Magn Reson       Date:  2010-10-26       Impact factor: 2.229

6.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

7.  The influence of internuclear spatial distribution and instrument noise on the precision of distances determined by solid state NMR of isotopically enriched proteins.

Authors:  John D Gehman; Eric K Paulson; Kurt W Zilm
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

8.  MAS solid state NMR of RNAs with multiple receivers.

Authors:  Christian Herbst; Kerstin Riedel; Yvonne Ihle; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2008-05-31       Impact factor: 2.835

Review 9.  Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy.

Authors:  Caitlin M Quinn; Tatyana Polenova
Journal:  Q Rev Biophys       Date:  2017-01       Impact factor: 5.318

10.  Water-protein hydrogen exchange in the micro-crystalline protein crh as observed by solid state NMR spectroscopy.

Authors:  Anja Böckmann; Michel Juy; Emmanuel Bettler; Lyndon Emsley; Anne Galinier; François Penin; Anne Lesage
Journal:  J Biomol NMR       Date:  2005-07       Impact factor: 2.835

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