Literature DB >> 12560474

The pre-ribosomal network.

Philipp Milkereit1, Holger Kühn, Nicole Gas, Herbert Tschochner.   

Abstract

Recent achievements in yeast functional proteomics have significantly advanced our knowledge about ribosome biogenesis. Here, we present a program developed to integrate data from various proteome analyses with cell biological data on components present in the ribosome producing factories. This program allows users to attribute factors to certain complexes and to specific steps of ribosome biogenesis. Thus, it helps to gain novel insights into the complex network involved in maturation of ribosomal subunits. The database can be accessed at the URL http://www.pre-ribosome.de.

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Year:  2003        PMID： 12560474      PMCID： PMC149187          DOI： 10.1093/nar/gkg165

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  23 in total

1.  Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps.

Authors:  C Saveanu; D Bienvenu; A Namane; P E Gleizes; N Gas; A Jacquier; M Fromont-Racine
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

2.  A nuclear AAA-type ATPase (Rix7p) is required for biogenesis and nuclear export of 60S ribosomal subunits.

Authors:  O Gadal; D Strauss; J Braspenning; D Hoepfner; E Petfalski; P Philippsen; D Tollervey; E Hurt
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

3.  Identification of a 60S preribosomal particle that is closely linked to nuclear export.

Authors:  J Bassler; P Grandi; O Gadal; T Lessmann; E Petfalski; D Tollervey; J Lechner; E Hurt
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

4.  Composition and functional characterization of yeast 66S ribosome assembly intermediates.

Authors:  P Harnpicharnchai; J Jakovljevic; E Horsey; T Miles; J Roman; M Rout; D Meagher; B Imai; Y Guo; C J Brame; J Shabanowitz; D F Hunt; J L Woolford
Journal:  Mol Cell       Date:  2001-09       Impact factor: 17.970

5.  Maturation and intranuclear transport of pre-ribosomes requires Noc proteins.

Authors:  P Milkereit; O Gadal; A Podtelejnikov; S Trumtel; N Gas; E Petfalski; D Tollervey; M Mann; E Hurt; H Tschochner
Journal:  Cell       Date:  2001-05-18       Impact factor: 41.582

6.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

7.  Nucleolar KKE/D repeat proteins Nop56p and Nop58p interact with Nop1p and are required for ribosome biogenesis.

Authors:  T Gautier; T Bergès; D Tollervey; E Hurt
Journal:  Mol Cell Biol       Date:  1997-12       Impact factor: 4.272

8.  Nuclear export of 60s ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p.

Authors:  O Gadal; D Strauss; J Kessl; B Trumpower; D Tollervey; E Hurt
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

9.  The nucle(ol)ar Tif6p and Efl1p are required for a late cytoplasmic step of ribosome synthesis.

Authors:  B Senger; D L Lafontaine; J S Graindorge; O Gadal; A Camasses; A Sanni; J M Garnier; M Breitenbach; E Hurt; F Fasiolo
Journal:  Mol Cell       Date:  2001-12       Impact factor: 17.970

10.  Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit.

Authors:  J H Ho; G Kallstrom; A W Johnson
Journal:  J Cell Biol       Date:  2000-11-27       Impact factor: 10.539
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  29 in total

1.  Cic1p/Nsa3p is required for synthesis and nuclear export of 60S ribosomal subunits.

Authors:  Alessandro Fatica; Marlene Oeffinger; David Tollervey; Irene Bozzoni
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

2.  Npa1p, a component of very early pre-60S ribosomal particles, associates with a subset of small nucleolar RNPs required for peptidyl transferase center modification.

Authors:  Christophe Dez; Carine Froment; Jacqueline Noaillac-Depeyre; Bernard Monsarrat; Michèle Caizergues-Ferrer; Yves Henry
Journal:  Mol Cell Biol       Date:  2004-07       Impact factor: 4.272

3.  The small-subunit processome is a ribosome assembly intermediate.

Authors:  Kara A Bernstein; Jennifer E G Gallagher; Brianna M Mitchell; Sander Granneman; Susan J Baserga
Journal:  Eukaryot Cell       Date:  2004-12

4.  Transcriptome and proteome profiling to understanding the biology of high productivity CHO cells.

Authors:  Peter Morin Nissom; Arleen Sanny; Yee Jiun Kok; Yeo Thong Hiang; Song Hui Chuah; Tan Kher Shing; Yih Yean Lee; Kathy Tin Kam Wong; Wei-Shou Hu; Miranda Yap Gek Sim; Robin Philp
Journal:  Mol Biotechnol       Date:  2006-10       Impact factor: 2.695

5.  Systematic identification and functional screens of uncharacterized proteins associated with eukaryotic ribosomal complexes.

Authors:  Tracey C Fleischer; Connie M Weaver; K Jill McAfee; Jennifer L Jennings; Andrew J Link
Journal:  Genes Dev       Date:  2006-05-15       Impact factor: 11.361

6.  Ribosomal protein L33 is required for ribosome biogenesis, subunit joining, and repression of GCN4 translation.

Authors:  Pilar Martín-Marcos; Alan G Hinnebusch; Mercedes Tamame
Journal:  Mol Cell Biol       Date:  2007-06-04       Impact factor: 4.272

Review 7.  The small subunit processome in ribosome biogenesis—progress and prospects.

Authors:  Kathleen R Phipps; J Michael Charette; Susan J Baserga
Journal:  Wiley Interdiscip Rev RNA       Date:  2011 Jan-Feb       Impact factor: 9.957

8.  RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.

Authors:  Jennifer E G Gallagher; David A Dunbar; Sander Granneman; Brianna M Mitchell; Yvonne Osheim; Ann L Beyer; Susan J Baserga
Journal:  Genes Dev       Date:  2004-10-15       Impact factor: 11.361

9.  The von Hippel-Lindau protein pVHL inhibits ribosome biogenesis and protein synthesis.

Authors:  Wen-Ting Zhao; Cheng-Fu Zhou; Xue-Bing Li; Yun-Fang Zhang; Li Fan; Jerry Pelletier; Jing Fang
Journal:  J Biol Chem       Date:  2013-04-23       Impact factor: 5.157

10.  Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes.

Authors:  Juliane Merl; Steffen Jakob; Katrin Ridinger; Thomas Hierlmeier; Rainer Deutzmann; Philipp Milkereit; Herbert Tschochner
Journal:  Nucleic Acids Res       Date:  2010-01-25       Impact factor: 16.971
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